PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo8G0063100

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

WRKY

Protein Properties

Length: 319aa MW: 35061 Da PI: 7.7133

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo8G0063100	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	106.7	1.2e-33	179	236	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s++prsYYrCt+++C+vkk+vers++dp++v++tYeg+H+h+ Spipo8G0063100 179 EDGYRWRKYGQKAVKNSPYPRSYYRCTTPKCSVKKRVERSHQDPSIVITTYEGQHTHH 236 8********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.5E-35	163	238	IPR003657	WRKY domain
SuperFamily	SSF118290	2.35E-29	170	238	IPR003657	WRKY domain
PROSITE profile	PS50811	31.215	173	238	IPR003657	WRKY domain
SMART	SM00774	2.3E-38	178	237	IPR003657	WRKY domain
Pfam	PF03106	1.3E-26	179	236	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MSENTVPYQG DRLIQDRNYS RFRDDHLFFS QRFEGISGPS HLLGADLSFT GCLNSSGDYH 60 VIESAFDLSS SPLAEDFFGH GDVGAPATTA VGITIDRSTS SGVNVATPNS SVSSSSTEAV 120 GEEDSGRSRK DLGEVAKADD GDDGSEKPKK PMKPRKKGEK RPREPRFAFM TKSEVDHLED 180 GYRWRKYGQK AVKNSPYPRS YYRCTTPKCS VKKRVERSHQ DPSIVITTYE GQHTHHSPAT 240 IRGSSHVLAP SPAMAGFCSE LLVHHRRLPT PLDVQLRETG PMNPQSLSPF PATQHPQCPP 300 DYGLLQDVVP FVVHHGKP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	7e-29	168	239	7	78	Probable WRKY transcription factor 4
2lex_A	7e-29	168	239	7	78	Probable WRKY transcription factor 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00440	DAP	Transfer from AT4G18170	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010926916.1	5e-94	WRKY transcription factor 28
Swissprot	Q8VWJ2	3e-48	WRK28_ARATH; WRKY transcription factor 28
TrEMBL	A0A1D1YPF3	1e-115	A0A1D1YPF3_9ARAE; Putative WRKY transcription factor 71 (Fragment)
STRING	XP_008777186.1	2e-88	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP623	37	173

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29860.1	6e-48	WRKY DNA-binding protein 71

Link Out ? help Back to Top
Phytozome	Spipo8G0063100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kim SH, et al. Characterization of a Novel DWD protein that participates in heat stress response in Arabidopsis. Mol. Cells, 2014. 37(11): p. 833-40 [PMID:25358503] Zhao L, et al. KLU suppresses megasporocyte cell fate through SWR1-mediated activation of WRKY28 expression in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2018. 115(3): p. E526-E535 [PMID:29288215]