PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo8G0045500
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family WRKY
Protein Properties Length: 302aa    MW: 32818.6 Da    PI: 7.2371
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo8G0045500genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY87.79.9e-28118178259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dg++WrKYGqK++ g+ +pr+YYrCt++   gCp++k+v+r++ dp+v+++ Y+geH + 
  Spipo8G0045500 118 EDGFSWRKYGQKDILGAAHPRGYYRCTHRntqGCPATKQVQRADGDPSVFNVLYKGEHVCA 178
                     7***************************98889*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.0E-28111179IPR003657WRKY domain
PROSITE profilePS5081122.538112175IPR003657WRKY domain
SuperFamilySSF1182901.57E-24116178IPR003657WRKY domain
SMARTSM007748.3E-40117179IPR003657WRKY domain
PfamPF031061.6E-26118177IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009816Biological Processdefense response to bacterium, incompatible interaction
GO:0010150Biological Processleaf senescence
GO:0010193Biological Processresponse to ozone
GO:0010200Biological Processresponse to chitin
GO:0031347Biological Processregulation of defense response
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0009507Cellular Componentchloroplast
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MENGVTWDPS LLIRELEKGQ DLTRQLETQL DQSPPEFCKS LLQSIQSALH RATSLAKSLT  60
DYEGGDSPRS VSGSDDSHRA AAFRDQDPRE ISKKRKMLPR WKKQVRANPG TSLEGPPEDG  120
FSWRKYGQKD ILGAAHPRGY YRCTHRNTQG CPATKQVQRA DGDPSVFNVL YKGEHVCAQR  180
ANSSPAPAPT PEQGQSFILD GRPGLRVITQ DLLQGSPPSF SSSPSPASHI FPSPATRFSS  240
PLLSPSTAAE AHFTAAGFAG GRHRRALESD LAEVLLVSAT SSPAMDLEFL VDVDFDGSFF  300
I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-19118177968OsWRKY45
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18795PREISKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1D1YRM05e-95A0A1D1YRM0_9ARAE; Putative WRKY transcription factor 41
STRINGXP_010266466.11e-73(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108638131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.23e-44WRKY family protein