PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT4G11070.2 | ||||||||
Common Name | AtWRKY41, F2P3.16, T22B4.50, WRKY41 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | WRKY | ||||||||
Protein Properties | Length: 281aa MW: 31499.4 Da PI: 9.4743 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 91.1 | 8.7e-29 | 109 | 169 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 dD ++WrKYGqK++ g++fprsYYrCt++ C+++k+v+rs+ dp+++e+tY+g+H+++ AT4G11070.2 109 DDIFSWRKYGQKDILGAKFPRSYYRCTFRntqYCWATKQVQRSDGDPTIFEVTYRGTHTCS 169 8**************************998889**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 20.599 | 103 | 166 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 7.4E-27 | 104 | 169 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.83E-24 | 107 | 169 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.5E-38 | 108 | 170 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.8E-26 | 109 | 168 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000293 | anatomy | guard cell |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence Send to blast |
MEMMNWERRS LLNELIHGLK AAKQLQAILM LNGSTTQHNP TIELAPDPLA HPGKVPGSPA 60 SITGNPRSEE FFNVRSKEFN LSSKKRKMLP KWTEQVRISP ERGLEGPHDD IFSWRKYGQK 120 DILGAKFPRS YYRCTFRNTQ YCWATKQVQR SDGDPTIFEV TYRGTHTCSQ GIPLPEKRET 180 KPKHTVAVNY QNLRASLTVR TGGLGSEAFS FPVTSPLYTY ESINGGGTFY HHVGSSGPSD 240 FTGLISTNTS TGSSPIFDVN FQFDPTAEIN TGFPTFFHNS I |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 3e-18 | 110 | 166 | 18 | 74 | Disease resistance protein RRS1 |
5w3x_D | 3e-18 | 110 | 166 | 18 | 74 | Disease resistance protein RRS1 |
6ir8_A | 3e-18 | 109 | 168 | 9 | 68 | OsWRKY45 |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.27346 | 0.0 | seed |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 30681646 | 0.0 | ||||
Expression Atlas | AT4G11070 | - | ||||
AtGenExpress | AT4G11070 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | member of WRKY Transcription Factor; Group III | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Function -- GeneRIF ? help Back to Top | ||||||
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT4G11070.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT4G11070 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT001107 | 0.0 | BT001107.1 Arabidopsis thaliana clone C103116 (A) putative WRKY family transcription factor (At4g11070) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_849358.1 | 0.0 | WRKY family transcription factor | ||||
Swissprot | Q8H0Y8 | 0.0 | WRK41_ARATH; Probable WRKY transcription factor 41 | ||||
TrEMBL | A0A178V3X9 | 0.0 | A0A178V3X9_ARATH; WRKY41 | ||||
STRING | AT4G11070.1 | 0.0 | (Arabidopsis thaliana) |
Link Out ? help Back to Top | |
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Phytozome | AT4G11070.2 |
Entrez Gene | 826708 |
iHOP | AT4G11070 |
wikigenes | AT4G11070 |