PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo8G0039000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | C3H | ||||||||
Protein Properties | Length: 379aa MW: 41570.6 Da PI: 7.657 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 29.1 | 1.8e-09 | 122 | 142 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C++f++ G Ck+Gd+C FaHg Spipo8G0039000 122 ACPDFRK-GSCKRGDTCEFAHG 142 7******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-6 | 114 | 144 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.24E-5 | 116 | 146 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.408 | 117 | 144 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.4E-7 | 117 | 143 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.6E-7 | 122 | 142 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 7.282 | 152 | 176 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 42 | 152 | 175 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 379 aa Download sequence Send to blast |
MMIGEGHRAL PAIHIPPWPA YEETAGGVAY SLPVSGVCAM AALQRFLPSN ESYLSDDAGD 60 ESELLLAPPV DAYSCDEFRM YEFKVRRCAR GRSHDWTECP YAHPGEKARR RDPRKYNYSG 120 TACPDFRKGS CKRGDTCEFA HGVFECWLHP TRYRTQPCKD GTGCRRRVCF FAHTAEQLRV 180 LSQPQQQQQQ QSPRTTAGTD SYDGSPLRHQ ALDACPKSLL SFPTSTRHSP PISPPSDSPP 240 LSPEGRSPVR ISVPLSSSVN DILVSLRHLQ LNKAMSSPSS WGLQTIGIGS PRGYNVSPAF 300 SSLPATPNRA LPAARGGLFD GWDGPTERVE SGRDLRAKIY EKLSKENSLD RQEEIESGGP 360 GGAVNVNPDV DWVSELVK* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023898530.1 | 1e-142 | zinc finger CCCH domain-containing protein 20-like | ||||
Swissprot | Q9M0G2 | 1e-114 | C3H49_ARATH; Zinc finger CCCH domain-containing protein 49 | ||||
TrEMBL | A0A1D1XN00 | 1e-149 | A0A1D1XN00_9ARAE; Zinc finger CCCH domain-containing protein 2 (Fragment) | ||||
STRING | XP_010244375.1 | 1e-140 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1578 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29190.1 | 1e-112 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Spipo8G0039000 |
Publications ? help Back to Top | |||
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