PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT4G29190.1
Common NameAtC3H49, AtOZF2, AtTZF3, F17A13.10, OZF2, TZF3
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 356aa    MW: 40264.4 Da    PI: 6.5884
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT4G29190.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.16.3e-08124144526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                   C++f++ G Ck Gd+C FaHg
  AT4G29190.1 124 ACPDFRK-GGCKKGDSCEFAHG 144
                  7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.4E-5119145IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.235120146IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-6123146IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-6124144IPR000571Zinc finger, CCCH-type
SMARTSM003560.9154177IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000013anatomycauline leaf
PO:0000037anatomyshoot apex
PO:0000084anatomyplant sperm cell
PO:0000230anatomyinflorescence meristem
PO:0000293anatomyguard cell
PO:0008019anatomyleaf lamina base
PO:0009005anatomyroot
PO:0009006anatomyshoot system
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009025anatomyvascular leaf
PO:0009029anatomystamen
PO:0009030anatomycarpel
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0009052anatomyflower pedicel
PO:0020030anatomycotyledon
PO:0020038anatomypetiole
PO:0020100anatomyhypocotyl
PO:0020137anatomyleaf apex
PO:0025022anatomycollective leaf structure
PO:0025281anatomypollen
PO:0001054developmental stagevascular leaf senescent stage
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007064developmental stageLP.12 twelve leaves visible stage
PO:0007095developmental stageLP.08 eight leaves visible stage
PO:0007098developmental stageLP.02 two leaves visible stage
PO:0007103developmental stageLP.10 ten leaves visible stage
PO:0007115developmental stageLP.04 four leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MMIGETRRTY PTVEIPPWPV LEELTTSEFF SPVMNSPDCS MLEALAGLQR YLPSNEPDPE  60
SYPDLLGPDS PIDAYSCDHF RMYDFKVRRC ARGRSHDWTE CPYAHPGEKA RRRDPRKYHY  120
SGTACPDFRK GGCKKGDSCE FAHGVFECWL HPARYRTQPC KDGGNCLRKI CFFAHSPDQL  180
RFLHTRSPDR VDSFDVSSPI RARAFQLSIS PVSGSPPMSP RADSESSPMT QSLSRSLGSC  240
SINDVVPSFR NLQFNSVKSF PRNNPLFGFG SPRGSILGPG FQSLPTTPTR PGNLDIWEYG  300
LEEEPVMERV VESGRELREK MREKLHKENC MDRVAQDPDQ NLGEAPDVGW VSDLLM
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.45300.0flower| seed
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO150283340.0
Genevisible253722_at0.0
Expression AtlasAT4G29190-
AtGenExpressAT4G29190-
ATTED-IIAT4G29190-
Function -- GeneRIF ? help Back to Top
  1. AtOZF2 is involved in the abscissic acid and salt stress response through the ABI2-mediated signaling pathway.[AtOZF2]
    [PMID: 22121246]
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT4G29190.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Interaction ? help Back to Top
Source Intact With
BioGRIDAT1G10585
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT4G29190
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1615740.0AL161574.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 70.
GenBankAY0459700.0AY045970.1 Arabidopsis thaliana unknown protein (At4g29190) mRNA, complete cds.
GenBankAY0793230.0AY079323.1 Arabidopsis thaliana unknown protein (At4g29190) mRNA, complete cds.
GenBankAY0856360.0AY085636.1 Arabidopsis thaliana clone 16432 mRNA, complete sequence.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_194648.10.0Zinc finger C-x8-C-x5-C-x3-H type family protein
SwissprotQ9M0G20.0C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLA0A178USF10.0A0A178USF1_ARATH; TZF3
STRINGAT4G29190.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12492788
Representative plantOGRP11701644
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Yamada K, et al.
    Empirical analysis of transcriptional activity in the Arabidopsis genome.
    Science, 2003. 302(5646): p. 842-6
    [PMID:14593172]
  3. S
    ABA activates ADPR cyclase and cADPR induces a subset of ABA-responsive genes in Arabidopsis.
    Plant J., 2004. 38(3): p. 381-95
    [PMID:15086800]
  4. Ishihara T, et al.
    Comparative analysis of expressed sequence tags in resistant and susceptible ecotypes of Arabidopsis thaliana infected with cucumber mosaic virus.
    Plant Cell Physiol., 2004. 45(4): p. 470-80
    [PMID:15111722]
  5. Hampton CR, et al.
    Cesium toxicity in Arabidopsis.
    Plant Physiol., 2004. 136(3): p. 3824-37
    [PMID:15489280]
  6. Delaney KJ, et al.
    Calmodulin interacts with and regulates the RNA-binding activity of an Arabidopsis polyadenylation factor subunit.
    Plant Physiol., 2006. 140(4): p. 1507-21
    [PMID:16500995]
  7. Xin Z,Mandaokar A,Chen J,Last RL,Browse J
    Arabidopsis ESK1 encodes a novel regulator of freezing tolerance.
    Plant J., 2007. 49(5): p. 786-99
    [PMID:17316173]
  8. Kong H, et al.
    Patterns of gene duplication in the plant SKP1 gene family in angiosperms: evidence for multiple mechanisms of rapid gene birth.
    Plant J., 2007. 50(5): p. 873-85
    [PMID:17470057]
  9. Wang D, et al.
    Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.
    BMC Genomics, 2008. 9: p. 44
    [PMID:18221561]
  10. Licausi F, et al.
    Hypoxia responsive gene expression is mediated by various subsets of transcription factors and miRNAs that are determined by the actual oxygen availability.
    New Phytol., 2011. 190(2): p. 442-56
    [PMID:20840511]
  11. Huang P, et al.
    Molecular and physiological characterization of the Arabidopsis thaliana Oxidation-related Zinc Finger 2, a plasma membrane protein involved in ABA and salt stress response through the ABI2-mediated signaling pathway.
    Plant Cell Physiol., 2012. 53(1): p. 193-203
    [PMID:22121246]
  12. Lee SJ,Jung HJ,Kang H,Kim SY
    Arabidopsis zinc finger proteins AtC3H49/AtTZF3 and AtC3H20/AtTZF2 are involved in ABA and JA responses.
    Plant Cell Physiol., 2012. 53(4): p. 673-86
    [PMID:22383628]
  13. Lumba S, et al.
    A mesoscale abscisic acid hormone interactome reveals a dynamic signaling landscape in Arabidopsis.
    Dev. Cell, 2014. 29(3): p. 360-72
    [PMID:24823379]
  14. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  15. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]