PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo7G0056800
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family B3
Protein Properties Length: 780aa    MW: 85662.8 Da    PI: 5.946
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo7G0056800genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B365.58e-21592689296
                     EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 
                     +kvl++sdv+++gr+vlpkk ae+h  +++++ ++ +++ed  ++r+W++++++  ++ks++y+l+ ++ +Fv++ngL+egDf+v++  ++ +++
  Spipo7G0056800 592 QKVLKQSDVGSLGRIVLPKKEAETHlpELETRDGISIVMEDiVTSRTWNMRYRFwpNNKSRMYLLE-NTGDFVRSNGLQEGDFIVIY--SDiKCG 683
                     599************************99999*********9999*******99777777777777.********************..677999 PP

                     ..EEEE CS
              B3  91 elvvkv 96 
                     +++++ 
  Spipo7G0056800 684 KYMIRG 689
                     888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010193.4E-18591693IPR003340B3 DNA binding domain
PROSITE profilePS5086310.912591693IPR003340B3 DNA binding domain
SuperFamilySSF1019362.55E-22592684IPR015300DNA-binding pseudobarrel domain
PfamPF023626.8E-17592688IPR003340B3 DNA binding domain
CDDcd100159.02E-33592690No hitNo description
Gene3DG3DSA:2.40.330.106.9E-27592702IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009657Biological Processplastid organization
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0001076Molecular Functiontranscription factor activity, RNA polymerase II transcription factor binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 780 aa     Download sequence    Send to blast
MASDLNIDCH EEQEMQKLAC EAKKMMMVEE QDAVEMQEGK RAGVGLYPGQ ELSGEDEVQK  60
GSLGVAEDED MMMAEIETDL IFSDDAFPSL PDFPCLSSPS NAACPSSSSS SNSSSSASSV  120
PWALGRQDHQ QHAEGQTSSS AVEDVPVTLP STPSDRKHPL ESLASDCSMY QFSGMDLLGS  180
TDESWDPLSL FPDDGEINNI DGDEPILQQG VRWTQQGEEL IQQQHHRELQ LLTLEEGDGG  240
DKGGGCISQD LAMVFLEWLR DNKETISPQD LRSIKLRRST IDCAVRSLGG GKDGMKKLLK  300
LILTWVQNNH LQKKRRPSTD LLAGEEEELE ITNLYQQTQA ASISPLPDLV QAPVSDPHEG  360
LVPNSCQSFL PVATPGPAIQ GPCSPWAPPG DPCGGEGLYS TAASTTPQSI QSFAPQSSFQ  420
AVEPVCPWSQ ALPQYPVFST SPHPTPSLYT SGGLPGQYPV GHLFHQGPGE SLVRLASSAT  480
KEARKKRMAR QRRFSSLHHS HNHHHHHHHQ RNQHHQSTHD QHQHQIHLQQ CAPALAGEGL  540
CSQTDAHGSW TFRPSTSPSS QQVVATGGAT ATTMPQQRQH DFPPGNTADR RQKVLKQSDV  600
GSLGRIVLPK KEAETHLPEL ETRDGISIVM EDIVTSRTWN MRYRFWPNNK SRMYLLENTG  660
DFVRSNGLQE GDFIVIYSDI KCGKYMIRGV KVRQSIDPNV SGNNSHKHNH QGNGHNGGSD  720
TRNNVLKNDA GCRNSSRIYC EMTENRNEHS DVKGSRQFAA TTSGLHTREA YPYDASTAH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A5e-355927006114B3 domain-containing transcription factor FUS3
6j9b_D5e-355927006114B3 domain-containing transcription factor FUS3
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00083PBMTransfer from AT3G24650Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75293443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.14e-81B3 family protein