PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo7G0056200
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family C3H
Protein Properties Length: 459aa    MW: 49571 Da    PI: 8.7784
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo7G0056200genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.92.3e-105883126
                    --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                    ++++ C ++ rtG C++G +C+F+H+
  Spipo7G0056200 58 PGEPDCAYYVRTGLCRFGTTCRFNHP 83
                    5789*********************8 PP
2zf-CCCH36.67.7e-12107131327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++C++++rtG C++G++CkF+H++
  Spipo7G0056200 107 QPECQYYLRTGACRFGATCKFHHPR 131
                     799********************96 PP
3zf-CCCH34.63.2e-11153177327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     ++ C +++rtG+Ck+G++C+F+H++
  Spipo7G0056200 153 EKDCAYYLRTGHCKFGSTCRFHHPQ 177
                     678********************97 PP
4zf-CCCH38.81.6e-12303329127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++ C+++++tG Ck+G+ C+F+H++
  Spipo7G0056200 303 PGEPVCQYYMKTGDCKFGALCRFHHPR 329
                     5789*********************96 PP
5zf-CCCH36.76.8e-12349375127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +++++C f++r+G+Ck+G++CkF H++
  Spipo7G0056200 349 PGEPPCVFYSRYGICKFGPNCKFDHPM 375
                     5899*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.8825785IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-55784IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-75983IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-56285IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-5104131IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.037104132IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-9107131IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-6107133IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-4110131IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.91150178IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-5150177IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-6151179IPR000571Zinc finger, CCCH-type
PfamPF006428.9E-9153177IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-4156176IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.234302330IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-6302329IPR000571Zinc finger, CCCH-type
PfamPF006429.4E-10304329IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-6305333IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-6307332IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.056348376IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-7348375IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-8350375IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5352376IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MGREKSAVEI SGGVRATTAA YMTEGSSSLG PHLGRDNMWQ MSMRANRAME PGPYPLRPGE  60
PDCAYYVRTG LCRFGTTCRF NHPINRKLAA AAATAKFSGA YPERVGQPEC QYYLRTGACR  120
FGATCKFHHP RDKAGISQKV QLNIFGFPVR PNEKDCAYYL RTGHCKFGST CRFHHPQPSN  180
AVVPIHGSVY PTVHSPTSLG QQSYPGGLTN WPLSRASFLP SPRWQGPSSY PRLILPQGMV  240
QVPSWSAFPL PSEGQQQPPG SGQLYGTLGQ SEATNAGVHG SFPSYHSTET FASQRENVFP  300
ERPGEPVCQY YMKTGDCKFG ALCRFHHPRE RLSPVPNCML SPLGLPLRPG EPPCVFYSRY  360
GICKFGPNCK FDHPMGAFMY GLSSPSSADA ADVRLLLGSP VVPPLPASSE GSGEVGPGKS  420
TQLILSEPEP RQLSADSENT QGEASRVASS GGPISSFG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010929825.10.0zinc finger CCCH domain-containing protein ZFN-like isoform X1
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A1D1Y5240.0A0A1D1Y524_9ARAE; Zinc finger CCCH domain-containing protein ZFN-like (Fragment)
STRINGXP_008812314.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-131zinc finger protein 1