PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT3G02830.1
Common NameF13E7.23, PNT1, ZFN1
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 397aa    MW: 44181.5 Da    PI: 7.8713
Description zinc finger protein 1
Gene Model
Gene Model ID Type Source Coding Sequence
AT3G02830.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.63.1e-114167127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                 ++++ C+++ rtG C++G++C+F+H++
  AT3G02830.1 41 PGEPDCSYYIRTGLCRFGSTCRFNHPR 67
                 5789*********************96 PP
2zf-CCCH37.63.7e-1288112327
                  S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                  +++C ++++tGtCk+G +CkF+H++
  AT3G02830.1  88 QPECEYYLKTGTCKFGVTCKFHHPR 112
                  799********************96 PP
3zf-CCCH36.49e-12134158327
                  S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                  ++ C +f+rtG+Ck+G++CkF+H++
  AT3G02830.1 134 EVDCAYFLRTGHCKFGGTCKFNHPQ 158
                  578********************97 PP
4zf-CCCH37.15.2e-12275301127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  +++++C+f+++tG Ck+G  CkF+H++
  AT3G02830.1 275 PGQPECQFYMKTGDCKFGTVCKFHHPR 301
                  5789*********************96 PP
5zf-CCCH35.41.8e-11321347127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  ++++lC f+ r+G+Ck+G++CkF H++
  AT3G02830.1 321 PGEPLCVFYTRYGICKFGPSCKFDHPM 347
                  589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003567.0E-54067IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.6994068IPR000571Zinc finger, CCCH-type
PfamPF006429.1E-84267IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.81E-64568IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-44667IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.10885113IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-585112IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-988112IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-689114IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-491112IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.549131159IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-5131158IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-9134158IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-6134160IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.8E-4137157IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.22274302IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-5274301IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-8276301IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.2E-6278303IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-4280302IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.187320348IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-7320347IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-8322347IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.3E-5323347IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-4325345IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0090305Biological Processnucleic acid phosphodiester bond hydrolysis
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0004518Molecular Functionnuclease activity
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000013anatomycauline leaf
PO:0000037anatomyshoot apex
PO:0000230anatomyinflorescence meristem
PO:0000293anatomyguard cell
PO:0008019anatomyleaf lamina base
PO:0009005anatomyroot
PO:0009006anatomyshoot system
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009025anatomyvascular leaf
PO:0009029anatomystamen
PO:0009030anatomycarpel
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0009052anatomyflower pedicel
PO:0020030anatomycotyledon
PO:0020038anatomypetiole
PO:0020100anatomyhypocotyl
PO:0020137anatomyleaf apex
PO:0025022anatomycollective leaf structure
PO:0025195anatomypollen tube cell
PO:0025281anatomypollen
PO:0001016developmental stageL mature pollen stage
PO:0001017developmental stageM germinated pollen stage
PO:0001054developmental stagevascular leaf senescent stage
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007064developmental stageLP.12 twelve leaves visible stage
PO:0007095developmental stageLP.08 eight leaves visible stage
PO:0007098developmental stageLP.02 two leaves visible stage
PO:0007103developmental stageLP.10 ten leaves visible stage
PO:0007115developmental stageLP.04 four leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MDFNAGVPMS SLSPLMNQDA MWQMNLSSDE TMETGSYPER PGEPDCSYYI RTGLCRFGST  60
CRFNHPRDRE LVIATARMRG EYPERIGQPE CEYYLKTGTC KFGVTCKFHH PRNKAGIAGR  120
VSLNMLGYPL RSNEVDCAYF LRTGHCKFGG TCKFNHPQPQ PTNMMVPTSG QQSYPWSRAS  180
FIASPRWQDP SSYASLIMPQ GVVPVQGWNP YSGQLGSVSP SGTGNDQNYR NLQQNETIES  240
GSQSQGSFSG YNPGSSVPLG GYYALPRENV FPERPGQPEC QFYMKTGDCK FGTVCKFHHP  300
RDRQAPPPDC LLSSIGLPLR PGEPLCVFYT RYGICKFGPS CKFDHPMRVF TYDNTASETD  360
EVVETSTGKS RRLSVSETRQ AATTSSGKDT TIDNTQQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.237060.0flower| inflorescence| vegetative tissue
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1453380350.0
Genevisible258621_at0.0
Expression AtlasAT3G02830-
AtGenExpressAT3G02830-
ATTED-IIAT3G02830-
Functional Description ? help Back to Top
Source Description
TAIREncodes a zinc finger protein.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT3G02830.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT3G02830
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0259660.0BT025966.1 Arabidopsis thaliana At3g02830 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_566183.10.0zinc finger protein 1
SwissprotQ8GXX70.0C3H33_ARATH; Zinc finger CCCH domain-containing protein 33
TrEMBLA0A178VJ680.0A0A178VJ68_ARATH; ZFN1
STRINGAT3G02830.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33892864
Representative plantOGRP12471750
Publications ? help Back to Top
  1. Chrispeels HE,Oettinger H,Janvier N,Tague BW
    AtZFP1, encoding Arabidopsis thaliana C2H2 zinc-finger protein 1, is expressed downstream of photomorphogenic activation.
    Plant Mol. Biol., 2000. 42(2): p. 279-90
    [PMID:10794528]
  2. Sakamoto H,Araki T,Meshi T,Iwabuchi M
    Expression of a subset of the Arabidopsis Cys(2)/His(2)-type zinc-finger protein gene family under water stress.
    Gene, 2000. 248(1-2): p. 23-32
    [PMID:10806347]
  3. Seki M, et al.
    Functional annotation of a full-length Arabidopsis cDNA collection.
    Science, 2002. 296(5565): p. 141-5
    [PMID:11910074]
  4. Hudson ME,Lisch DR,Quail PH
    The FHY3 and FAR1 genes encode transposase-related proteins involved in regulation of gene expression by the phytochrome A-signaling pathway.
    Plant J., 2003. 34(4): p. 453-71
    [PMID:12753585]
  5. Jiao Y, et al.
    A genome-wide analysis of blue-light regulation of Arabidopsis transcription factor gene expression during seedling development.
    Plant Physiol., 2003. 133(4): p. 1480-93
    [PMID:14605227]
  6. Tepperman JM, et al.
    Expression profiling of phyB mutant demonstrates substantial contribution of other phytochromes to red-light-regulated gene expression during seedling de-etiolation.
    Plant J., 2004. 38(5): p. 725-39
    [PMID:15144375]
  7. Lloyd A,Plaisier CL,Carroll D,Drews GN
    Targeted mutagenesis using zinc-finger nucleases in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2005. 102(6): p. 2232-7
    [PMID:15677315]
  8. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  9. Rodriguez Milla MA, et al.
    A novel yeast two-hybrid approach to identify CDPK substrates: characterization of the interaction between AtCPK11 and AtDi19, a nuclear zinc finger protein.
    FEBS Lett., 2006. 580(3): p. 904-11
    [PMID:16438971]
  10. Delaney KJ, et al.
    Calmodulin interacts with and regulates the RNA-binding activity of an Arabidopsis polyadenylation factor subunit.
    Plant Physiol., 2006. 140(4): p. 1507-21
    [PMID:16500995]
  11. Wang D, et al.
    Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.
    BMC Genomics, 2008. 9: p. 44
    [PMID:18221561]
  12. Wang Y, et al.
    Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis.
    Plant Physiol., 2008. 148(3): p. 1201-11
    [PMID:18775970]
  13. Reiland S, et al.
    Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.
    Plant Physiol., 2009. 150(2): p. 889-903
    [PMID:19376835]
  14. Paik I,Yang S,Choi G
    Phytochrome regulates translation of mRNA in the cytosol.
    Proc. Natl. Acad. Sci. U.S.A., 2012. 109(4): p. 1335-40
    [PMID:22232680]
  15. Efroni I, et al.
    Regulation of leaf maturation by chromatin-mediated modulation of cytokinin responses.
    Dev. Cell, 2013. 24(4): p. 438-45
    [PMID:23449474]
  16. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  17. Tague BW,Gallant P,Goodman HM
    Expression analysis of an Arabidopsis C2H2 zinc finger protein gene.
    Plant Mol. Biol., 1996. 32(5): p. 785-96
    [PMID:8980531]