PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo7G0022300
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family B3
Protein Properties Length: 373aa    MW: 42692.8 Da    PI: 10.0961
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo7G0022300genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B366.24.7e-2115105198
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     ffkv+   +  +s+rl +p +f+++++ +   ++ + l+ ++g sW+  l +r  +g++++++GW+eFv++ +Lk+gDf+vFk+ g  +f  +v 
  Spipo7G0022300  15 FFKVF--ISDISSKRLGIPPDFCRHIEPN--MNRRICLRRPRGSSWSADL-VREEGGGVFFQNGWEEFVSDLDLKTGDFLVFKYGGGPRF--TVL 102
                     88999..88889999********999755..5568***************.6888888**************************987888..888 PP

                     EE- CS
              B3  96 vfr 98 
                     vf+
  Spipo7G0022300 103 VFD 105
                     887 PP
2B332.91.2e-10276363598
                     -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                     +  s+v     + lp + + eh   ++ ++t++l+++s    Wev + ++ ++g+  +++GW  F++a +L++ D++vF+l +    e +v+++r
  Spipo7G0022300 276 MRDSNVYHGYYMGLPSSLT-EHL--PRADRTMQLRSPSMeAAWEVAYVHCEGRGG--FSAGWGTFARALDLESDDVLVFELFR--PLEVRVHIYR 363
                     5566677777788999988.552..345679*****888799*****88777777..89*********************876..5556777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.0E-248109IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.06E-2410109IPR015300DNA-binding pseudobarrel domain
CDDcd100171.84E-2013105No hitNo description
PROSITE profilePS5086314.66313107IPR003340B3 DNA binding domain
PfamPF023627.9E-1915105IPR003340B3 DNA binding domain
SMARTSM010192.3E-2015107IPR003340B3 DNA binding domain
SuperFamilySSF1019367.26E-16266363IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.4E-14266363IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.4E-6271365IPR003340B3 DNA binding domain
PROSITE profilePS5086310.137272365IPR003340B3 DNA binding domain
CDDcd100176.92E-12275363No hitNo description
PfamPF023621.2E-8275363IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MARPSTTAKE RRPQFFKVFI SDISSKRLGI PPDFCRHIEP NMNRRICLRR PRGSSWSADL  60
VREEGGGVFF QNGWEEFVSD LDLKTGDFLV FKYGGGPRFT VLVFDPTGCE KEASQTAPFP  120
EVVILGESHR TRRRPGKEVV TFVAKEEPQS DEGPLPLALR PRRFLPDLRL TWDLDGMQMR  180
AMHAPETREE GRSQSDRQMR RVEARRGDPA VSVRPVRAAR AWTMTSFINA EVRVRIKTRL  240
GSVISHRRRI TEEEKARTLE SALCFRSKHP FGLSVMRDSN VYHGYYMGLP SSLTEHLPRA  300
DRTMQLRSPS MEAAWEVAYV HCEGRGGFSA GWGTFARALD LESDDVLVFE LFRPLEVRVH  360
IYRVIEKLPW LS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44613766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.12e-16B3 family protein