PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT5G66980.1
Common NameK8A10.5
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 334aa    MW: 38779.9 Da    PI: 5.2155
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT5G66980.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.72.4e-1910103198
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                  ffkv+     + s+ lv+p  f++  +  k+ +k+  l de gr W v+ + + + +r  +++tkGW++F++++ L+ gDf+vF++dg+s+f   v++
  AT5G66980.1  10 FFKVF--LPEFGSHELVIPPAFIDMLE--KPLPKEAFLVDEIGRLWCVETKTEDTEERfcVFFTKGWQSFANDQSLEFGDFLVFSYDGDSRF--SVTI 101
                  78888..77889999********7666..66999****************88777777899***************************9999..8888 PP

                  E- CS
           B3  97 fr 98 
                  f 
  AT5G66980.1 102 FA 103
                  75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.3E-227107IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.8748105IPR003340B3 DNA binding domain
SuperFamilySSF1019361.69E-218107IPR015300DNA-binding pseudobarrel domain
PfamPF023628.7E-1810103IPR003340B3 DNA binding domain
CDDcd100171.43E-1710102No hitNo description
SMARTSM010193.2E-2110105IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.4E-13213299IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.41E-14214302IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.925218317IPR003340B3 DNA binding domain
CDDcd100174.38E-8219313No hitNo description
SMARTSM010191.5E-13221317IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000084anatomyplant sperm cell
PO:0009005anatomyroot
PO:0009046anatomyflower
PO:0020094anatomyplant egg cell
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MVDLSKDLQF FKVFLPEFGS HELVIPPAFI DMLEKPLPKE AFLVDEIGRL WCVETKTEDT  60
EERFCVFFTK GWQSFANDQS LEFGDFLVFS YDGDSRFSVT IFANDGCKKD VGVVSTTDRS  120
RVSLDEEEPD DIFTKPDRMR DCDCGQSINR KRKRDSVNED PHVLVDDKPE YVSTYKTKPE  180
HSEKTQRTVN RAGDTCDISW FPEKKHNGFE ESVYKPKHPH FVRNITRGSL QKLELPLTFL  240
RSNGIELEED IELCDESGKK WPLKILNHDR GFKFSHESWL CFCKSHEMIL TNKCLFEFIV  300
PSNGRCSEIL VRIVSGRLPT TMTKNNYQVI DMQP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A4e-1351076104At1g16640
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO184251360.0
Genevisible247017_at0.0
Expression AtlasAT5G66980-
AtGenExpressAT5G66980-
ATTED-IIAT5G66980-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT5G66980.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT5G66980
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0266400.0AB026640.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K8A10.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_201499.10.0AP2/B3-like transcriptional factor family protein
SwissprotQ9FGD20.0Y5698_ARATH; Putative B3 domain-containing protein At5g66980
TrEMBLA0A178UDX40.0A0A178UDX4_ARATH; Uncharacterized protein
STRINGAT5G66980.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM128022130
Representative plantOGRP8585614
Publications ? help Back to Top
  1. Swaminathan K,Peterson K,Jack T
    The plant B3 superfamily.
    Trends Plant Sci., 2008. 13(12): p. 647-55
    [PMID:18986826]
  2. Wuest SE, et al.
    Arabidopsis female gametophyte gene expression map reveals similarities between plant and animal gametes.
    Curr. Biol., 2010. 20(6): p. 506-12
    [PMID:20226671]
  3. Licausi F, et al.
    Hypoxia responsive gene expression is mediated by various subsets of transcription factors and miRNAs that are determined by the actual oxygen availability.
    New Phytol., 2011. 190(2): p. 442-56
    [PMID:20840511]
  4. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]