PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo7G0021500
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family B3
Protein Properties Length: 700aa    MW: 76933.4 Da    PI: 5.3018
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo7G0021500genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.82.3e-14731491799
                     E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                     +lp kfa+  g+    + t  l+d++gr+Wevk+  +k +gr  +++GW  Fv ++ + +g+ +vFk+ + s+f   v++f k
  Spipo7G0021500  73 TLPPKFARLWGSL--LDETAHLKDSDGRRWEVKV--SKVDGRLAFGEGWDVFVVQHSIMVGELLVFKYAEVSSF--IVQIFGK 149
                     7999999777755..6779***************..********************************988999..9999987 PP
2B330.75.5e-106096772798
                     ---..--SEEEEEETTS-EEEEEE..EEETTEEEE-...TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3  27 ggkkeesktltledesgrsWevkliyrkksgryvlt...kGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                     g kk + + + l+d++ r+W v +    +   ++++   +GWk Fv  ng++egD++ F+++g  e ++++++ +
  Spipo7G0021500 609 GRKKLQRRVVPLRDPEMRVWPVVY--LES---FWFQgflGGWKAFVVGNGVREGDTCHFEMVG-FEMQPMLQISD 677
                     55566777899*************..333...34443337********************987.55556777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.84457150IPR003340B3 DNA binding domain
SMARTSM010195.8E-963150IPR003340B3 DNA binding domain
SuperFamilySSF1019361.2E-1771152IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.2E-1771152IPR015300DNA-binding pseudobarrel domain
PfamPF023622.6E-1273149IPR003340B3 DNA binding domain
CDDcd100171.11E-1473147No hitNo description
SMARTSM010190.0099586679IPR003340B3 DNA binding domain
PfamPF023621.8E-7609677IPR003340B3 DNA binding domain
CDDcd100176.40E-12615677No hitNo description
SuperFamilySSF1019361.24E-10615669IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.0E-8615666IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.248618679IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 700 aa     Download sequence    Send to blast
MKAQKVCLIA FRYSIDHLVE VHDLSARINI EGNTACSEQH LGVLAPSDTG LNGGSTLLCI  60
HPRVASLRTV YTTLPPKFAR LWGSLLDETA HLKDSDGRRW EVKVSKVDGR LAFGEGWDVF  120
VVQHSIMVGE LLVFKYAEVS SFIVQIFGKS GCERWHFCQR THDDRDESVL HCSSGRKRSA  180
SEWLVGLHGN AKKPDKSGVD YCGKPEDSVR GGTPNRVVPT EELEHQTAAA IEHNEMPCIL  240
ISEDENSEEE KWGGPHKSIR QEMAAKISNS EYSQNKGATI TDEEKSSDGN QRRQSRDSFG  300
RKHKGIMNKV PGAKNATVRN SLKNGLGPRP ASVGSCRNLI MELPISISSS GPGAPPKDRG  360
LNASEDDDLR KTTAVNNASG SEWISSLGCS TSEEENQCCF DTHVYQFLVD GQGTCHIVKN  420
SIFDPGSCGN STGFTKDDAD GIQKRKLCSS STTKGISSPH DTAPEELSAS PTLCGRREEY  480
SPKTDQINGE NDAQNAHLEA LGRNAEARPA GDNASVVRDR PEGIIDVVPL REEMLGGSSC  540
EYGVKGDAMV EEDEKLKHSL EEAILKEVKI EILAEDEPLA ANPPPFCFSL VVDTLTFHEL  600
PDPIPSIVGR KKLQRRVVPL RDPEMRVWPV VYLESFWFQG FLGGWKAFVV GNGVREGDTC  660
HFEMVGFEMQ PMLQISDTEL ALWVMLNWAE EIKDAGPVY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114613240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.17e-14B3 family protein