PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT3G18960.1 | ||||||||
Common Name | K13E13.7 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | B3 | ||||||||
Protein Properties | Length: 209aa MW: 24091.5 Da PI: 7.8347 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 51.4 | 1.9e-16 | 30 | 119 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 ffk +ps + k +++ +p +f++ g+k s +tle++ g + ++kl ++ ++++++ +GW+eF++a+ ++eg f++F+++++s+f +v +f AT3G18960.1 30 FFKLVLPSTM-KDKMMKIPPRFVKLQGSK--LSEVVTLETPAGFKRSIKL--KRIGEEIWFHEGWSEFAEAHSIEEGHFLLFEYKENSSF--RVIIF 119 6676656555.5556********555554..7789***************..********************************999999..77666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.55E-23 | 24 | 124 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.2E-22 | 24 | 124 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.63E-17 | 28 | 120 | No hit | No description |
PROSITE profile | PS50863 | 12.957 | 29 | 122 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.9E-20 | 30 | 122 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.6E-15 | 30 | 120 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000293 | anatomy | guard cell |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MVTTQNTKAR VTSVSHRRSQ QDPESPVKKF FKLVLPSTMK DKMMKIPPRF VKLQGSKLSE 60 VVTLETPAGF KRSIKLKRIG EEIWFHEGWS EFAEAHSIEE GHFLLFEYKE NSSFRVIIFN 120 VSACETKYPL DAVHIIDSDD DIIDITGKEF VGTQGTRKNN QSVNGGDTEH KSKKRSRDIE 180 LDKILHDLDV MNPMHVLKEE EEDKRVFRG |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.66475 | 0.0 | flower |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 42564992 | 0.0 | ||||
Genevisible | 256918_s_at | 1e-159 | ||||
Expression Atlas | AT3G18960 | - | ||||
AtGenExpress | AT3G18960 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT3G18960.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Interaction ? help Back to Top | ||||||
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Source | Intact With | |||||
BioGRID | AT5G08330 | |||||
IntAct | Search Q84R27 |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT3G18960 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK229681 | 0.0 | AK229681.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL21-04-N20. | |||
GenBank | BT006139 | 0.0 | BT006139.1 Arabidopsis thaliana clone RAFL21-04-N20 (R51235) unknown protein (At3g18960) mRNA, complete cds. | |||
GenBank | BT008541 | 0.0 | BT008541.1 Arabidopsis thaliana clone U51235 unknown protein (At3g18960) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_188526.2 | 1e-154 | AP2/B3-like transcriptional factor family protein | ||||
Swissprot | Q84R27 | 1e-155 | Y3896_ARATH; B3 domain-containing protein At3g18960 | ||||
TrEMBL | A0A178VGT7 | 1e-152 | A0A178VGT7_ARATH; Uncharacterized protein | ||||
STRING | AT3G18960.1 | 1e-153 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1591 | 25 | 78 | Representative plant | OGRP2051 | 14 | 36 |
Link Out ? help Back to Top | |
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Phytozome | AT3G18960.1 |
Entrez Gene | 821429 |
iHOP | AT3G18960 |
wikigenes | AT3G18960 |
Publications ? help Back to Top | |||
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