PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo7G0012500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | MYB | ||||||||
Protein Properties | Length: 243aa MW: 26370.5 Da PI: 5.1894 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 41.8 | 2.4e-13 | 16 | 61 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g+W +eEde l+++vk++G+++W++I ++ + R++k+c++rw + Spipo7G0012500 16 KGPWMAEEDEVLIEYVKKYGPRDWSSIRSKGLLPRSGKSCRLRWVN 61 79*************************8876677**********87 PP | |||||||
2 | Myb_DNA-binding | 45.9 | 1.3e-14 | 72 | 112 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++++eE+ + +++ +q+G++ W++Ia +++ gRt++++k++w Spipo7G0012500 72 KFSAEEERIVIELQAQFGNK-WARIATYLP-GRTDNDVKNFWS 112 79******************.*********.***********5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.339 | 11 | 63 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-20 | 12 | 64 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.13E-28 | 13 | 111 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-11 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.9E-12 | 16 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.01E-12 | 18 | 63 | No hit | No description |
PROSITE profile | PS51294 | 20.911 | 64 | 119 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.2E-19 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.6E-13 | 69 | 117 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.67E-12 | 72 | 111 | No hit | No description |
Pfam | PF00249 | 6.0E-13 | 72 | 112 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048235 | Biological Process | pollen sperm cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MRRRDGGSTS AAPLRKGPWM AEEDEVLIEY VKKYGPRDWS SIRSKGLLPR SGKSCRLRWV 60 NKLKPDLKTG CKFSAEEERI VIELQAQFGN KWARIATYLP GRTDNDVKNF WSTRQKRLAR 120 LLQAQSGPNS EDLHGRCSLH HEQRIAFEAL LDLPLLPETH HLATDFEGVD FDPESLAHDV 180 PDFDLFSDGL AAPPPGGSGG GGGGGGGGEF DEGMPAAADG LFGDFPVEML DGLDPPASSS 240 PS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 3e-29 | 14 | 117 | 25 | 126 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010934130.3 | 8e-71 | probable transcription factor MYB58 | ||||
TrEMBL | A0A3S3MW50 | 3e-74 | A0A3S3MW50_9MAGN; SANT/Myb domain-containing protein | ||||
STRING | XP_010259182.1 | 2e-72 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5700 | 33 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60460.1 | 3e-66 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Spipo7G0012500 |