PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo6G0065000
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family C3H
Protein Properties Length: 637aa    MW: 67411.1 Da    PI: 7.7767
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo6G0065000genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH246.6e-08256276526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C+ f++ G C+ Gd C +aHg
  Spipo6G0065000 256 PCPEFRK-GSCRNGDACEYAHG 276
                     8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF127965.6E-777144IPR020683Ankyrin repeat-containing domain
SMARTSM002480.003577107IPR002110Ankyrin repeat
PROSITE profilePS500888.81677102IPR002110Ankyrin repeat
PROSITE profilePS5029714.23977152IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.5E-1477180IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484037.0E-1377157IPR020683Ankyrin repeat-containing domain
CDDcd002043.05E-1179152No hitNo description
PROSITE profilePS500889.244112147IPR002110Ankyrin repeat
SMARTSM002480.1112144IPR002110Ankyrin repeat
SMARTSM003564.9E-5251277IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.638251278IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-4256278IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-5256276IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.5E-4284315IPR000571Zinc finger, CCCH-type
SMARTSM0035631286309IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.944286310IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 637 aa     Download sequence    Send to blast
MCGGVGKLSR GSEAAEGHAA MDGAGVCKGK KLQGSVLLEL AAADDLSGFR RAVEGGGLDV  60
DLPSPWYGRW GRRMAFEERT PLMIAAVYGS SAVLEYILST GAADVNRACG TDRFTALHCA  120
ASGGAPSSVD AVNLLIAASA DVEAVNAAGK KPGDLIWRKF FPGGPSKLRS LELLLKAAAH  180
GGAAPASPPK KDYPADLTLP DIKSGIYGTD EFRMYSFKVK PCSRAYSHDW TECPFVHPGE  240
NARRRDPRKY PYSCVPCPEF RKGSCRNGDA CEYAHGVFEC WLHPGQYRTR LCKDETGCTR  300
RVCFFAHKPE ELRSPAATHG GAGSPGLPPL DIAAPGSLML NQQQQQQQPM SPTGVSSALA  360
AAWMNQGGGM LTPTRQLPSS RLKTSLNARE AEMDMELLGL EGYQKKIIEE MAGLSSPSSW  420
KNSLAEEYDS PALLSHLQGL SLRQSSAAAG GSAAAHFQTL SGIGMNQQLY SQQPPRSSPS  480
SSSFGLDHTL AAAAAAAVMN SRASAFAKRS QSFCDRGAVS RLSGMGAAAA AAAAPPLSGW  540
ASPDGKLDWG IQGDELNKLR KSASFGFRGN GVVRRESAPA AAVDEPDVSW VQSLVKDAPP  600
VSGGLRIGSF DEFRPSETFS PWADQLLYME QEQMVA*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00566DAPTransfer from AT5G58620Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006488539.30.0zinc finger CCCH domain-containing protein 66 isoform X1
RefseqXP_024957718.10.0zinc finger CCCH domain-containing protein 66 isoform X2
TrEMBLA0A200PWW80.0A0A200PWW8_9MAGN; Zinc finger protein
STRINGXP_006488539.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60132133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.11e-154C3H family protein