PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT5G58620.1 | ||||||||
Common Name | MZN1.16, MZN1.8, TZF9 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | C3H | ||||||||
Protein Properties | Length: 607aa MW: 66447.6 Da PI: 5.2252 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 26.1 | 1.5e-08 | 254 | 274 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C++Gd+C +aHg AT5G58620.1 254 PCPEFRK-GSCSRGDTCEYAHG 274 8******.*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF12796 | 5.3E-9 | 53 | 123 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 3.73E-13 | 54 | 132 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 13.708 | 57 | 132 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 1.1E-13 | 57 | 132 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.0044 | 57 | 87 | IPR002110 | Ankyrin repeat |
CDD | cd00204 | 7.81E-14 | 59 | 165 | No hit | No description |
SMART | SM00248 | 0.0053 | 92 | 124 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 9.297 | 92 | 127 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 4.9E-5 | 249 | 275 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.5E-4 | 253 | 276 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.4E-6 | 254 | 274 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.263 | 254 | 276 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.4E-4 | 282 | 312 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.221 | 284 | 308 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 20 | 284 | 307 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000230 | anatomy | inflorescence meristem | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0009005 | anatomy | root | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0009052 | anatomy | flower pedicel | ||||
PO:0020100 | anatomy | hypocotyl | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0025195 | anatomy | pollen tube cell | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0001185 | developmental stage | plant embryo globular stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007115 | developmental stage | LP.04 four leaves visible stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 607 aa Download sequence Send to blast |
MGVDELSHLK FSLLLESSAC NDLSGFKSLV EEEGLESIDG SGLWYGRRLG SKKMGFEERT 60 PLMIAALFGS KEVVDYIIST GLVDVNRSCG SDGATALHCA VSGLSANSLE IVTLLLKGSA 120 NPDSCDAYGN KPGDVIFPCL SPVFSARMKV LERLLKGNDD LNEVNGQEES EPEVEVEVEV 180 SPPRGSERKE YPVDPTLPDI KNGVYGTDEF RMYAFKIKPC SRAYSHDWTE CPFVHPGENA 240 RRRDPRKYHY SCVPCPEFRK GSCSRGDTCE YAHGIFECWL HPAQYRTRLC KDETNCSRRV 300 CFFAHKPEEL RPLYPSTGSG VPSPRSSFSS CNSSTAFDMG PISPLPIGAT TTPPLSPNGV 360 SSPIGGGKTW MNWPNITPPA LQLPGSRLKS ALNAREIDFS EEMQSLTSPT TWNNTPMSSP 420 FSGKGMNRLA GGAMSPVNSL SDMFGTEDNT SGLQIRRSVI NPQLHSNSLS SSPVGANSLF 480 SMDSSAVLAS RAAEFAKQRS QSFIERNNGL NHHPAISSMT TTCLNDWGSL DGKLDWSVQG 540 DELQKLRKST SFRLRAGGME SRLPNEGTGL EEPDVSWVEP LVKEPQETRL APVWMEQSYM 600 ETEQTVA |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.49189 | 0.0 | floral meristem| leaf| seed |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 30697105 | 0.0 | ||||
Genevisible | 247795_at | 0.0 | ||||
Expression Atlas | AT5G58620 | - | ||||
AtGenExpress | AT5G58620 | - | ||||
ATTED-II | AT5G58620 | - |
Function -- GeneRIF ? help Back to Top | ||||||
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Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00566 | DAP | 27203113 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT5G58620.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Interaction ? help Back to Top | ||||||
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Source | Intact With | |||||
IntAct | Search Q9LUZ4 |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT5G58620 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB020755 | 0.0 | AB020755.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MZN1. | |||
GenBank | AY054176 | 0.0 | AY054176.1 Arabidopsis thaliana AT5g58620/mzn1_70 mRNA, complete cds. | |||
GenBank | AY103314 | 0.0 | AY103314.1 Arabidopsis thaliana AT5g58620/mzn1_70 mRNA, complete cds. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_200670.1 | 0.0 | zinc finger (CCCH-type) family protein | ||||
Swissprot | Q9LUZ4 | 0.0 | C3H66_ARATH; Zinc finger CCCH domain-containing protein 66 | ||||
TrEMBL | A0A178UPU0 | 0.0 | A0A178UPU0_ARATH; Uncharacterized protein | ||||
STRING | AT5G58620.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM877 | 26 | 107 | Representative plant | OGRP709 | 15 | 69 |
Link Out ? help Back to Top | |
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Phytozome | AT5G58620.1 |
Entrez Gene | 835976 |
iHOP | AT5G58620 |
wikigenes | AT5G58620 |