PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo6G0064500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | MYB_related | ||||||||
Protein Properties | Length: 56aa MW: 6082.88 Da PI: 8.2455 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 41.2 | 3.7e-13 | 15 | 54 | 1 | 41 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41 +++W++eEde l +++ q+G +Wk I++ + gRt+ c+ Spipo6G0064500 15 KKKWSPEEDEALRRLIGQHGACNWKFISASIS-GRTDILCR 54 689*****************************.****9888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.018 | 10 | 55 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.3E-11 | 12 | 54 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.2E-13 | 14 | 54 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.5E-11 | 15 | 54 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.21E-9 | 17 | 55 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 56 aa Download sequence Send to blast |
MDGTEGKEGG HPATKKKWSP EEDEALRRLI GQHGACNWKF ISASISGRTD ILCRL* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67300.1 | 9e-11 | myb domain protein r1 |
Link Out ? help Back to Top | |
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Phytozome | Spipo6G0064500 |