PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo5G0076900
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family Trihelix
Protein Properties Length: 301aa    MW: 34769.9 Da    PI: 8.834
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo5G0076900genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix84.31.5e-2648129186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W +qe+++Li++r  +e+++  +k++k+lWe+v ++mrerg++r+p+qCk+kw+nl +ryk  ++++ ++     ++cp+fd+l+
  Spipo5G0076900  48 QWGHQETRDLIAIRAALERDSTVSKRNKTLWEAVTARMRERGYRRTPEQCKCKWKNLVNRYKGKETSDPEN----GRQCPFFDELH 129
                     7**************************************************************99999974....678******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122034.49E-2247112No hitNo description
PfamPF138375.5E-2347130No hitNo description
PROSITE profilePS500907.17849105IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MASLPLQLGG DMGGIGVGIG LHPQQRKGEE TSGKGMGGMA MGGVGNPQWG HQETRDLIAI  60
RAALERDSTV SKRNKTLWEA VTARMRERGY RRTPEQCKCK WKNLVNRYKG KETSDPENGR  120
QCPFFDELHA VFNERAKNMQ RHLLESEAGG PQGKKKLKRP SGDRSSEDVS DDDADDDEDS  180
DEDHTSKGKK KRSDRGQPQQ RLGDKSKSAG NIHELLQEFI QQQQRMEAQW QEMMERRAHE  240
RRMFEQEWRQ SMEKLERERL MMEQSWRERE EQRRMREEAR AEKREALLTT LLNKLIHDGL  300
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ebi_A2e-1249119777DNA binding protein GT-1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021889923.11e-112trihelix transcription factor GT-3b-like
TrEMBLA0A371F1K11e-118A0A371F1K1_MUCPR; Trihelix transcription factor GT-3b (Fragment)
STRINGGLYMA01G35370.21e-106(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106883037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38250.14e-28Trihelix family protein