PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo5G0076100
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family MYB_related
Protein Properties Length: 553aa    MW: 63345.7 Da    PI: 10.0733
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo5G0076100genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.62.5e-07341382145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + +W +eE +l+ ++ +++G++ Wk  a+ +gk+Rt   +k+ w+
   Spipo5G0076100 341 KRKWEPEELDLIRRYQEEHGPK-WKEMAELLGKHRTH--VKDAWR 382
                      569*****************99.********977765..777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.577263336IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.3E-5264336IPR009057Homeodomain-like
SMARTSM007172.1E-7267338IPR001005SANT/Myb domain
SMARTSM007171.3340387IPR001005SANT/Myb domain
PROSITE profilePS500906.62341385IPR017877Myb-like domain
SuperFamilySSF466894.1E-7341402IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.8E-7343395IPR009057Homeodomain-like
PfamPF139213.6E-10344402No hitNo description
PROSITE profilePS500906.679386471IPR017877Myb-like domain
SMARTSM007171.8390473IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-5396409IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-5445472IPR009057Homeodomain-like
PROSITE profilePS500905.018473512IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MAKLLSKHKF MSKTHGEESQ QKWHNHPANC IDSTFSWQII VQLLELVGHS PSADRDRGRN  60
FRSPDSIMRF STTSNLGKNS EEGSKKPPGS LEGKKMKKRN TPEVGIKLES SQADDPSETL  120
MDVDKTKKKK KKKGERGNKD SRSYSEQDAV EEERVGYDNH KLQSSVTKGE KKSKKNKKNK  180
DRTAESAEIS VDEASGEEML GKDTKKRKSR KNSVEKGPSD HRDANGKSSK SSDGSRKRVS  240
FSGHVEVFPS TVDEKSASKS SEEDLVRGKR FSEEEDEMIK KAVFDYIKGN NLGEDGLQMV  300
LRCGSHREVR NCWKEIGAAL PWRPRQSVYN RAQTLFRRGE KRKWEPEELD LIRRYQEEHG  360
PKWKEMAELL GKHRTHVKDA WRRIRLANPK KGKWTQEEYQ SLFDLVNMDL QIKAFEEKKT  420
KHGMLLVRHP PAYPSLLPLR QLRENISWGA ISQKMSSRYE MACCMKWYKQ LTSPLVGQGL  480
WADADDYLLI DGSGEICLKR WRQMARHIGG TRERSFMEQV ELLATRYCPN MLEYRTQSLN  540
KSAADGSGGC EI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1126132KKKKKKK
2336342RRGEKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023897174.11e-123DNA-binding protein REB1-like
RefseqXP_023897175.11e-123DNA-binding protein REB1-like
RefseqXP_023897176.11e-123DNA-binding protein REB1-like
RefseqXP_023897177.11e-123DNA-binding protein REB1-like
RefseqXP_023897178.11e-123DNA-binding protein REB1-like
TrEMBLA0A1D1YR751e-169A0A1D1YR75_9ARAE; Cyclin-D-binding Myb-like transcription factor 1 (Fragment)
STRINGXP_006448813.11e-120(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54052635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.19e-97MYB_related family protein