PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT5G41020.1
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB_related
Protein Properties Length: 588aa    MW: 68195.6 Da    PI: 8.4138
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT5G41020.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.94.8e-08380419345
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                       WT+e+ el  +  k +G++ Wkt a  mg  + +k++k+ w+
      AT5G41020.1 380 IWTKEDIELVMEFQKTHGND-WKTLADAMG--KHRKHVKDAWR 419
                      5*******************.********9..78999999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.3E-6303373IPR009057Homeodomain-like
SMARTSM007173.2E-4304375IPR001005SANT/Myb domain
PROSITE profilePS500904.983307373IPR017877Myb-like domain
SMARTSM007172.2377424IPR001005SANT/Myb domain
PROSITE profilePS500906.446378420IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.604.9E-5378419IPR009057Homeodomain-like
SuperFamilySSF466891.79E-6379438IPR009057Homeodomain-like
PfamPF139211.6E-8381439No hitNo description
PROSITE profilePS500906.388423491IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.608.8E-4426491IPR009057Homeodomain-like
SMARTSM0071753427493IPR001005SANT/Myb domain
SuperFamilySSF466892.32E-5471545IPR009057Homeodomain-like
PROSITE profilePS500907.549493546IPR017877Myb-like domain
SMARTSM0071771497548IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0030154Biological Processcell differentiation
GO:0005634Cellular Componentnucleus
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0001135Molecular Functiontranscription factor activity, RNA polymerase II transcription factor recruiting
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000293anatomyguard cell
Sequence ? help Back to Top
Protein Sequence    Length: 588 aa     Download sequence    Send to blast
MAEEKKNKKK KSDAKVDSEE TGEEFISEHS SMKDKEKKRK KNKRENKDGF TGEDMEITGR  60
ESEKLGDEVF IVKKKKKSKK PIRIDSEAVD AVKKKSKKRS KETKADSEAE DDGVEKKSKE  120
KSKETKVDSE AHDGVKRKKK KSKKESGGDV IENTESSKVS DKKKGKRKRD DTDLGAEENI  180
DKEVKRKNNK KKPSVDSDVE DINLDSTNDG KKKRKKKKQS EDSETEENGL NSTKDAKKRR  240
KKKKKKKQSE VSEAEEKSDK SDEDLTTPST SSKRVKFSDQ VEFFPSDDDE GTEDDDEEEV  300
KVVRGKRFTK EEDEMVKNAV LEYIDNHALG DEGIKMVMEC KAYPQLKGCW KEITSALPWR  360
TYNSVYHRAH TIFEAGSQGI WTKEDIELVM EFQKTHGNDW KTLADAMGKH RKHVKDAWRR  420
GRLAGKKKGH WMREEYQNLF DLVNKDLRMK AFKEKHSKHG MLKDNIPWMA ISDVLETRDH  480
VTCCQKWYEQ LISPMVAKGM WANVDDYRLL EELLKLDAAC IDDVDWDNLL ENRDGEACRK  540
RWNQMIIHIG VPKSKTFAEQ VEILSDRYCP DIAEDREDFD NRPYDPED
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1211215KKRKK
2236240KKRRK
3236241KKRRKK
4238244RRKKKKK
5238246RRKKKKKKK
6240246KKKKKKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.302570.0cell culture| flower
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO306937150.0
Expression AtlasAT5G41020-
AtGenExpressAT5G41020-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT5G41020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT5G41020
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0100720.0AB010072.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MEE6.
GenBankAY5196530.0AY519653.1 Arabidopsis thaliana MYB transcription factor (At5g41020) mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_198918.10.0myb family transcription factor
TrEMBLQ9FLM70.0Q9FLM7_ARATH; Gb|AAC33480.1
STRINGAT5G41020.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63272537
Representative plantOGRP53221418
Publications ? help Back to Top
  1. Yanhui C, et al.
    The MYB transcription factor superfamily of Arabidopsis: expression analysis and phylogenetic comparison with the rice MYB family.
    Plant Mol. Biol., 2006. 60(1): p. 107-24
    [PMID:16463103]
  2. Tran LS, et al.
    Co-expression of the stress-inducible zinc finger homeodomain ZFHD1 and NAC transcription factors enhances expression of the ERD1 gene in Arabidopsis.
    Plant J., 2007. 49(1): p. 46-63
    [PMID:17233795]