PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo5G0066100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | B3 | ||||||||
Protein Properties | Length: 127aa MW: 13825.9 Da PI: 7.0827 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 49.4 | 8.2e-16 | 15 | 104 | 5 | 99 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 l +++v + +lv+pk+f +e + ++ + ++sW v + + ++ + + W++F+ +n+Lk+gD ++F+l+++ ++ +++v++++ Spipo5G0066100 15 LARANVDCQFQLVIPKSFYAELPAA----TLPVVLSCGNKSWAVSY--LGDCKQRRFDSRWRNFAVDNHLKVGDACIFELMDSgKSLKFKVQILD 103 5667888999*********988533....2347778899*******..66666666999*********************988899999999987 PP S CS B3 99 k 99 Spipo5G0066100 104 G 104 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 5.89E-17 | 7 | 103 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.4E-17 | 7 | 103 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.98E-17 | 9 | 103 | No hit | No description |
SMART | SM01019 | 9.4E-5 | 10 | 105 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.265 | 11 | 105 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-13 | 16 | 103 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 127 aa Download sequence Send to blast |
MTEPLSGKPF FSCILARANV DCQFQLVIPK SFYAELPAAT LPVVLSCGNK SWAVSYLGDC 60 KQRRFDSRWR NFAVDNHLKV GDACIFELMD SGKSLKFKVQ ILDGSIPSFV AALDDGSSSN 120 SPITID* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008802551.1 | 1e-40 | B3 domain-containing protein Os04g0386900-like | ||||
TrEMBL | A0A1D1Z2E3 | 5e-49 | A0A1D1Z2E3_9ARAE; B3 domain-containing protein Os04g0386900 | ||||
STRING | XP_008802551.1 | 4e-40 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8954 | 35 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06160.1 | 3e-08 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Spipo5G0066100 |