PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT3G06160.1
Common NameF28L1.10, REM21
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 330aa    MW: 37422.9 Da    PI: 5.6071
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT3G06160.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.45.6e-1825112196
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                  ff+v+   ++ +s  +v+p+++   + ++ + +kt +l  + gr W+v +  + k++++++++GW +Fv +n+Lkeg+f++F +dg+++    v++
  AT3G06160.1  25 FFTVF--LSHCSSESMVIPRSYY--NLLPRPLPKTAILIGTGGRFWKVAM--TSKQEQVYFEQGWGNFVADNQLKEGEFLTFVFDGHKSY--EVSI 112
                  55666..55566667*******9..55677899*****************..99*9***************************9986655..5555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.47E-2122118IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.0E-1823115IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.77523116IPR003340B3 DNA binding domain
CDDcd100173.97E-1723113No hitNo description
SMARTSM010196.2E-2025116IPR003340B3 DNA binding domain
PfamPF023626.2E-1525112IPR003340B3 DNA binding domain
SMARTSM010190.46233321IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0000293anatomyguard cell
PO:0008019anatomyleaf lamina base
PO:0009006anatomyshoot system
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009025anatomyvascular leaf
PO:0009030anatomycarpel
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009052anatomyflower pedicel
PO:0020038anatomypetiole
PO:0025022anatomycollective leaf structure
PO:0001054developmental stagevascular leaf senescent stage
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007098developmental stageLP.02 two leaves visible stage
PO:0007115developmental stageLP.04 four leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MWATKSRRCA VHTSSMASGD VLPRFFTVFL SHCSSESMVI PRSYYNLLPR PLPKTAILIG  60
TGGRFWKVAM TSKQEQVYFE QGWGNFVADN QLKEGEFLTF VFDGHKSYEV SIYGRGDCKE  120
TRAVIQVEEI SDDTEDDNVS LHSPSNVSLD SLSNDSHHST SNVSLRSLSN DSLHGDAEIE  180
SDSEYSPENL PSASISVESV EVVNPTTSRQ RSYKRKTIEN PHLYLDDPNN VCFETCLKLR  240
KFELLVHAQL VKDYGLIFSD NVDYIDGYGK LTAKTTKWAD QRVCINKWQK ICERNQFTEN  300
DSILCEILRN EDKVVYAIKI HIFRDAAAST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A2e-18141181104At1g16640
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
Genevisible256418_at0.0
Expression AtlasAT3G06160-
AtGenExpressAT3G06160-
ATTED-IIAT3G06160-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT3G06160.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT3G06160
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankATAC0189070.0AC018907.5 Arabidopsis thaliana chromosome III BAC F28L1 genomic sequence, complete sequence.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_187267.10.0AP2/B3-like transcriptional factor family protein
SwissprotQ9M8K20.0REM21_ARATH; B3 domain-containing protein REM21
TrEMBLA0A178V9100.0A0A178V910_ARATH; Uncharacterized protein
STRINGAT3G06160.20.0(Arabidopsis thaliana)
Publications ? help Back to Top
  1. Lee J, et al.
    Analysis of transcription factor HY5 genomic binding sites revealed its hierarchical role in light regulation of development.
    Plant Cell, 2007. 19(3): p. 731-49
    [PMID:17337630]
  2. Swaminathan K,Peterson K,Jack T
    The plant B3 superfamily.
    Trends Plant Sci., 2008. 13(12): p. 647-55
    [PMID:18986826]