PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo5G0060700
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family C3H
Protein Properties Length: 342aa    MW: 36856.6 Da    PI: 7.9084
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo5G0060700genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.83.8e-0879103126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt+lC+ f++ GtC+y  +C+FaHg
  Spipo5G0060700  79 FKTKLCCKFRA-GTCPYITNCNFAHG 103
                     69*********.*************8 PP
2zf-CCCH18.14.8e-06149174126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     yk + C+ f+    C+yGd+C+F H+
  Spipo5G0060700 149 YKGRHCKKFYTDEGCPYGDTCTFLHD 174
                     77888********************7 PP
3zf-CCCH38.71.7e-12214239126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt++C+ +  tG+C++ ++C+FaHg
  Spipo5G0060700 214 WKTRICNKWEMTGYCPFESKCQFAHG 239
                     8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902295.23E-876109IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-1476111IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.95378105IPR000571Zinc finger, CCCH-type
SMARTSM003560.003778104IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-579103IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-7147176IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-9147176IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.742148176IPR000571Zinc finger, CCCH-type
SMARTSM003560.29148175IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-9211244IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.3E-16212244IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.549213241IPR000571Zinc finger, CCCH-type
SMARTSM003564.3E-8213240IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-9214239IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MSRGDYRGDA ITITPQAWPA PADQALWATE DDYRSWNGER EPSSDASNHE QQPPAKRPRG  60
GGAASAAASR SKAIGKMFFK TKLCCKFRAG TCPYITNCNF AHGIEELRKP PPNWQEILAA  120
QEDGPEVPRE EHRIPIISSG AGGEAQRSYK GRHCKKFYTD EGCPYGDTCT FLHDEQSRSR  180
ESLAISLGPS GGSNGYGGAA GSGGGGYNQK LSNWKTRICN KWEMTGYCPF ESKCQFAHGA  240
AELQRFGGGL LEGEGRDSSS TPSDPRQAGI LSRPPVDSMA YSSSVPHADS YPMGISSQRS  300
GGGGGGGGGS LRQGERERPL QRWKGPQKIS RVYGDWIDDH E*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1299309SGGGGGGGGGS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0046353e-49AP004635.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0672D01.
GenBankAP0046983e-49AP004698.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0498E12.
GenBankAP0149643e-49AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126163e-49CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010935018.11e-146zinc finger CCCH domain-containing protein 56
SwissprotQ84UQ31e-124C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
TrEMBLA0A2H3XTX91e-144A0A2H3XTX9_PHODC; zinc finger CCCH domain-containing protein 56-like isoform X2
STRINGXP_008788660.11e-143(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66153853
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.19e-90C3H family protein