PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT1G32360.1 | ||||||||
Common Name | F27G20.10, F5D14.12 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | C3H | ||||||||
Protein Properties | Length: 384aa MW: 40706 Da PI: 7.9467 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23 | 1.4e-07 | 92 | 115 | 1 | 25 |
--S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaH 25 +kt+lC+ f++ GtC+y +C+FaH AT1G32360.1 92 FKTKLCCKFRA-GTCPYITNCNFAH 115 69*********.************* PP | |||||||
2 | zf-CCCH | 42.6 | 1e-13 | 261 | 286 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg AT1G32360.1 261 WKTRICNKWEITGYCPFGAKCHFAHG 286 8************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 1.9E-13 | 89 | 124 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.83E-7 | 89 | 122 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.38 | 91 | 118 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0044 | 91 | 117 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.6E-5 | 92 | 115 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.29E-7 | 172 | 199 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.47 | 172 | 199 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.244 | 172 | 200 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.4E-8 | 173 | 199 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.2E-17 | 254 | 290 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.06E-9 | 257 | 291 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.178 | 260 | 288 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.2E-9 | 260 | 287 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.3E-11 | 261 | 286 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0061158 | Biological Process | 3'-UTR-mediated mRNA destabilization | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0003730 | Molecular Function | mRNA 3'-UTR binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000013 | anatomy | cauline leaf | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000230 | anatomy | inflorescence meristem | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0008019 | anatomy | leaf lamina base | ||||
PO:0009005 | anatomy | root | ||||
PO:0009006 | anatomy | shoot system | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0009052 | anatomy | flower pedicel | ||||
PO:0020030 | anatomy | cotyledon | ||||
PO:0020038 | anatomy | petiole | ||||
PO:0020100 | anatomy | hypocotyl | ||||
PO:0020137 | anatomy | leaf apex | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0025195 | anatomy | pollen tube cell | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001016 | developmental stage | L mature pollen stage | ||||
PO:0001017 | developmental stage | M germinated pollen stage | ||||
PO:0001054 | developmental stage | vascular leaf senescent stage | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0001185 | developmental stage | plant embryo globular stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007064 | developmental stage | LP.12 twelve leaves visible stage | ||||
PO:0007095 | developmental stage | LP.08 eight leaves visible stage | ||||
PO:0007098 | developmental stage | LP.02 two leaves visible stage | ||||
PO:0007103 | developmental stage | LP.10 ten leaves visible stage | ||||
PO:0007115 | developmental stage | LP.04 four leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 384 aa Download sequence Send to blast |
MSHHRRDSGG DVVHVIPTNN PPPDNWFPNL GDSAVWATED DYNRAWAMNP DNTSGDNNGP 60 PNKKTRGSPS SSSATTTSAA SNRTKAIGKM FFKTKLCCKF RAGTCPYITN CNFAHTVEEL 120 RRPPPNWQEI VAAHEEERSG GMGTPTVSVV EIPREEFQIP SLVSSTAESG RSFKGRHCKK 180 FYTEEGCPYG ESCTFLHDEA SRNRESVAIS LGPGGYGSGG GGGSGGGSVG GGGSSSNVVV 240 LGGGGGSGSG SGIQILKPSN WKTRICNKWE ITGYCPFGAK CHFAHGAAEL HRFGGGLVEE 300 EGKDGVSPNP DTKQTVQNPK GLSDTTTLLS PGVPHNADAS YHTGVALQRA SSAVTQKPGI 360 RTHQKWKGPA KISRIYGDWI DDIE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 217 | 227 | SGGGGGSGGGS |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 42562464 | 0.0 | ||||
Genevisible | 260652_at | 0.0 | ||||
Expression Atlas | AT1G32360 | - | ||||
AtGenExpress | AT1G32360 | - | ||||
ATTED-II | AT1G32360 | - |
Function -- GeneRIF ? help Back to Top | ||||||
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT1G32360.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT1G32360 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK118013 | 0.0 | AK118013.1 Arabidopsis thaliana At1g32360 mRNA for putative RING-H2 zinc finger protein ATL6, complete cds, clone: RAFL19-22-M03. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_564396.1 | 0.0 | Zinc finger (CCCH-type) family protein | ||||
Swissprot | Q9LQM3 | 0.0 | C3H12_ARATH; Zinc finger CCCH domain-containing protein 12 | ||||
TrEMBL | A0A178W5Q1 | 0.0 | A0A178W5Q1_ARATH; Uncharacterized protein | ||||
STRING | AT1G32360.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4003 | 27 | 58 | Representative plant | OGRP2045 | 17 | 37 |
Link Out ? help Back to Top | |
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Phytozome | AT1G32360.1 |
Entrez Gene | 840128 |
iHOP | AT1G32360 |
wikigenes | AT1G32360 |