PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo5G0049900
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family MYB_related
Protein Properties Length: 270aa    MW: 28563.9 Da    PI: 10.1187
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo5G0049900genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.49.3e-15100144347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+  ++++  +lG+g+W+ I++++ ++Rt+ q+ s+ qky
   Spipo5G0049900 100 PWTEEEHRTFLEGLDKLGKGDWRGISKKFVLTRTPTQVASHAQKY 144
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.64493149IPR017930Myb domain
SuperFamilySSF466891.79E-1795149IPR009057Homeodomain-like
TIGRFAMsTIGR015575.4E-1896148IPR006447Myb domain, plants
SMARTSM007173.0E-1197147IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.9E-1297143IPR009057Homeodomain-like
PfamPF002491.7E-12100144IPR001005SANT/Myb domain
CDDcd001677.30E-10100145No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MESSDARGGE GKAGVRLFGV MISAGGGAAE EKDGRAREWA GEEIIRKSRS MSNLAAAADP  60
AAENAAFERG YLSEGGLQKS GKRRRRRAGA AAHERKKGVP WTEEEHRTFL EGLDKLGKGD  120
WRGISKKFVL TRTPTQVASH AQKYFIRQTA PSGRRRRSSL FDVVIGDSAS TSEAQKGSSM  180
EINLPPRDGK RNEAVVAAAA AAFSGPPRTE DFLAGNGGAC EPSGPHPMVG VSGSMRQLSV  240
SGEPEDPPQL SLMLGIAQGR EGVATQYVE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18186KRRRRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9FKF92e-40M5162_ARATH; Probable transcription factor At5g61620
TrEMBLA0A1D1YQR61e-66A0A1D1YQR6_9ARAE; Transcription factor MYB1R1 (Fragment)
STRINGTraes_7AL_9E45828B0.12e-50(Triticum aestivum)
STRINGTRIUR3_24105-P12e-50(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58583652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.14e-31MYB_related family protein
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]