PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo5G0048600
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family Trihelix
Protein Properties Length: 553aa    MW: 61399.3 Da    PI: 5.2653
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo5G0048600genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix109.52.2e-34367451186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     rW+k ev+aLi++r+++e+r+++  lk+plWeevs++m++ g++rs+k+Ckekwen+nk+++k+k++ kkr s++s+tcpyf+ql+
  Spipo5G0048600 367 RWPKAEVQALIQVRSNLETRFQEPGLKGPLWEEVSSAMAAMGYQRSAKRCKEKWENINKYFRKTKDSIKKR-SNHSKTCPYFHQLD 451
                     8*********************************************************************8.89999********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0067364426IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.7E-4365423IPR009057Homeodomain-like
PROSITE profilePS500907.085366424IPR017877Myb-like domain
CDDcd122032.95E-28366431No hitNo description
PfamPF138374.5E-24367453No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MTQQLFHHGH QFHLFQQEQQ RRIHQQLVQL GLDHDSGPEN STSPTRIIAA ASGGGSAGIS  60
PFLNGVDFKL GVNDSIGGGD SRERLNDEEG ILQVDDGEEI HHIHPWATRE DSNIKEPFWR  120
PLDIDYSNRN SKRCKEKQPD ASNSASNFKL FSELEAICKP ISSSGDCGGG GNRPSVNNNQ  180
QTGSGSVLTG ENPPAISTTP RADYGHNTET ADQGSDSSTG EEAAQIQKPT KCDGGRKRKR  240
RQHQLSSIAA FMEGLVKKLM EHQEGLHRKF LEILDRRDQE RMNREETWRQ QEAAKATSEA  300
MAKAQDQALA TSREAAIIFF LEKITGESLN LPTREQFHSP AQEESSHKEE PKHIDGTNPA  360
IVINPSRWPK AEVQALIQVR SNLETRFQEP GLKGPLWEEV SSAMAAMGYQ RSAKRCKEKW  420
ENINKYFRKT KDSIKKRSNH SKTCPYFHQL DQLYSKSPAK PPPPVAASAD RGDMSELLHA  480
VMAANDETHE AAGSAITGKG ALKLPWRKPN NLEENDEDED DDDDDDDDDE GEDEGEEADR  540
DSQGEGSRAP RS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1234241GRKRKRRQ
2235240RKRKRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00651PBMTransfer from LOC_Os02g01380Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009385847.11e-145PREDICTED: trihelix transcription factor GTL1-like
TrEMBLA0A1D1YMF80.0A0A1D1YMF8_9ARAE; Trihelix transcription factor GT-2 (Fragment)
STRINGGSMUA_Achr1P24120_0011e-143(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63993547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.22e-53Trihelix family protein