PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo5G0040800
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bHLH
Protein Properties Length: 425aa    MW: 44902.8 Da    PI: 7.4274
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo5G0040800genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.22.9e-13262308354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     ++h e+Er+RR+++N++f  Lr+++P+       +++Ka+ L  Av YIk+L
  Spipo5G0040800 262 ASHVEAERQRREKLNHRFYALRSVVPNV-----SRMDKASLLADAVAYIKEL 308
                     589************************6.....4****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.7E-3915199IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.492259308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.23E-18261328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-10263308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.22E-14263313No hitNo description
Gene3DG3DSA:4.10.280.106.0E-17263318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-16265314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MATSNFPMQP TPLTLKHRLQ FLLHTLPDCW AYAVLWRLSS SSPPDGRPLL SWSDGHLRGG  60
AAASSSRTSS SSNSNNNNDE AFLFSTPDKK KLTGGGAAEE VVTDIEWFYL VSQARSFPAG  120
AGAGAGDQPI PSRAFNNGAH IWLCGAHELQ VYGCDRSREA LLHGVATIVC IPTGDGVLEL  180
ASAEVVREDW TVVQQAKALL GHFQPLGSGG AAAAAKPKKE EPGGGAAAAG LMSSLDSEHS  240
DSEGQRPKKR GRRPGPAGDA PASHVEAERQ RREKLNHRFY ALRSVVPNVS RMDKASLLAD  300
AVAYIKELRT RVAELEQLRR RTPPQAAPSL AEGLDGGATM EVEVRVVEGG EAMVRVTAAA  360
EGGGHPAARV MAALRELDMK VHHASMTTVK GVMVVDVVAG APTGLLSEEA LKGSLIAMLE  420
KQQP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5t0f_A1e-2591883180Transcription factor MYC3
5t0q_A1e-2591883180Transcription factor MYC3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094312.11e-117transcription factor MYC2
TrEMBLA0A1D1XT201e-129A0A1D1XT20_9ARAE; Transcription factor bHLH14 (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.13e-48bHLH family protein