PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT4G00870.1 | ||||||||
Common Name | A_TM018A10.7, BHLH14, EN33, T18A10.17 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | bHLH | ||||||||
Protein Properties | Length: 423aa MW: 47732.7 Da PI: 7.7291 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.7 | 9e-13 | 249 | 294 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+E++RR+++N++f Lr ++Pk +++Ka+ L Av YI sL AT4G00870.1 249 SHVEAEKQRREKLNHRFYALRAIVPKV-----SRMDKASLLSDAVSYIESL 294 799***********************6.....4****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 3.6E-30 | 35 | 189 | IPR025610 | Transcription factor MYC/MYB N-terminal |
SuperFamily | SSF47459 | 1.24E-16 | 244 | 309 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.475 | 245 | 294 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.84E-11 | 248 | 298 | No hit | No description |
Pfam | PF00010 | 2.1E-10 | 249 | 294 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.8E-16 | 249 | 310 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.1E-15 | 251 | 300 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009052 | anatomy | flower pedicel | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0001185 | developmental stage | plant embryo globular stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 423 aa Download sequence Send to blast |
MYNLTFSPSL SSSLLSFTQQ TPAAIVSSSP PDLVLQQKLR FVVETSPDRW AYVIFWQKMF 60 DDQSDRSYLV WVDGHFCGNK NNNSQENYTT NSIECELMMD GGDDLELFYA ASFYGEDRSP 120 RKEVSDESLV WLTGPDELRF SNYERAKEAG FHGVHTLVSI PINNGIIELG SSESIIQNRN 180 FINRVKSIFG SGKTTKHTNQ TGSYPKPAVS DHSKSGNQQF GSERKRRRKL ETTRVAAATK 240 EKHHPAVLSH VEAEKQRREK LNHRFYALRA IVPKVSRMDK ASLLSDAVSY IESLKSKIDD 300 LETEIKKMKM TETDKLDNSS SNTSPSSVEY QVNQKPSKSN RGSDLEVQVK IVGEEAIIRV 360 QTENVNHPTS ALMSALMEMD CRVQHANASR LSQVMVQDVV VLVPEGLRSE DRLRTTLVRT 420 LSL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 1e-20 | 248 | 304 | 7 | 63 | Transcription factor MYC2 |
5gnj_B | 1e-20 | 248 | 304 | 7 | 63 | Transcription factor MYC2 |
5gnj_E | 1e-20 | 248 | 304 | 7 | 63 | Transcription factor MYC2 |
5gnj_F | 1e-20 | 248 | 304 | 7 | 63 | Transcription factor MYC2 |
5gnj_G | 1e-20 | 248 | 304 | 7 | 63 | Transcription factor MYC2 |
5gnj_I | 1e-20 | 248 | 304 | 7 | 63 | Transcription factor MYC2 |
5gnj_M | 1e-20 | 248 | 304 | 7 | 63 | Transcription factor MYC2 |
5gnj_N | 1e-20 | 248 | 304 | 7 | 63 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 222 | 229 | ERKRRRKL |
2 | 223 | 227 | RKRRR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.34506 | 0.0 | flower |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
Genevisible | 255644_at | 0.0 | ||||
Expression Atlas | AT4G00870 | - | ||||
AtGenExpress | AT4G00870 | - | ||||
ATTED-II | AT4G00870 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT4G00870.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT4G00870 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ519812 | 0.0 | AJ519812.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_567195.1 | 0.0 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | ||||
Swissprot | O23090 | 0.0 | BH014_ARATH; Transcription factor bHLH14 | ||||
TrEMBL | A0A178V3J7 | 0.0 | A0A178V3J7_ARATH; Uncharacterized protein | ||||
STRING | AT4G00870.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3039 | 21 | 63 | Representative plant | OGRP8004 | 7 | 17 |
Link Out ? help Back to Top | |
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Phytozome | AT4G00870.1 |
Entrez Gene | 827990 |
iHOP | AT4G00870 |
wikigenes | AT4G00870 |