PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo5G0031100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | B3 | ||||||||
Protein Properties | Length: 113aa MW: 13354.5 Da PI: 8.5167 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 43 | 8.4e-14 | 25 | 104 | 1 | 88 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.s 88 ffkvl +++ rl++p+kf+ g + ++ s +W++kl +k++++++l++GW+eF++a+ L++ Df+vF+++g+ + Spipo5G0031100 25 FFKVL--LGDFSR-RLSVPRKFMVLLRGR--LPEMVE--LDSEGRWRIKL--KKTDCTTFLEEGWEEFARAQFLEVVDFLVFRVVGSlE 104 66666..555555.6********777655..443444..445789*****..*******************************988633 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 6.87E-15 | 19 | 104 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 6.0E-16 | 19 | 102 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.207 | 22 | 112 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.62E-12 | 23 | 98 | No hit | No description |
SMART | SM01019 | 9.5E-4 | 25 | 112 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.6E-11 | 25 | 105 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 113 aa Download sequence Send to blast |
MQETGRGSPE VPYSNWRMRT QKPHFFKVLL GDFSRRLSVP RKFMVLLRGR LPEMVELDSE 60 GRWRIKLKKT DCTTFLEEGW EEFARAQFLE VVDFLVFRVV GSLEDPLFLD FH* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2901 | 29 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G32460.1 | 3e-09 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Spipo5G0031100 |