PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT5G32460.1 | ||||||||
Common Name | F18O9.70 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | B3 | ||||||||
Protein Properties | Length: 530aa MW: 60887.8 Da PI: 9.9073 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 40.9 | 3.7e-13 | 24 | 95 | 13 | 94 |
TT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 13 sgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 + +v+pk f +++ g ++ + l++ + +W++k+ ++++ +tkGW+eF+ a++L++ D++vF+++g+ l++ AT5G32460.1 24 T-YIVIPKAFYSNYleGRQEGN--AAELRSdATEITWKIKI--DGRR----MTKGWEEFAVAHNLQVDDILVFRHEGN----LLF 95 4.48*******99996555444..5666654899*******..9998....9**********************7663....333 PP | |||||||
2 | B3 | 44.9 | 2e-14 | 150 | 238 | 7 | 97 |
.-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 ++++ + + ++lp+ f+++ g++k + +++l de+ r ++kl+y+k+s+r+ ++GW+ F+ ng ++g f+ + l++ +++++v+++f AT5G32460.1 150 TASNQRVDSFYLPRGFTTSSGSSKLC-NEIILIDEKDRPSTLKLRYNKSSNRFCVSRGWRAFCCRNGYRTGCFLRIILVR-KGKTPVLRIF 238 6667777889*******999988866.5**********************************************999987.8888999998 PP | |||||||
3 | B3 | 37.4 | 4.4e-12 | 301 | 390 | 6 | 97 |
..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 +++++ +++ + lpk +++ g++k + k+++++d++grs + l+y+ +++r++ ++GWk F+ n+ k+g f+ + l++ +++++v+++f AT5G32460.1 301 VTASNQRHDSFHLPKGLTTSSGLSKLC-KKIIFMDQKGRSSILDLSYSISDDRFTVRRGWKAFCCRNEHKTGCFLRLILVQ-NGKTPVLRIF 390 5788999999***********999866.7**********************************************999998.6777899887 PP | |||||||
4 | B3 | 50.6 | 3.5e-16 | 434 | 514 | 4 | 85 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 v ++ ++l++++l lp + +++ ++k+ + +++l++++gr+W + l+y+k+sgr+ +t+GWk+F++ang k g ++++kl+ AT5G32460.1 434 VSVTVSNLSEDILHLPIRLSRSNLLDKKIH-EIVLMNKEGRTWILSLKYSKYSGRFRITRGWKSFCEANGQKPGCTFLLKLH 514 56788999***************7777775.9******************************************99999975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.4E-18 | 7 | 103 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.71E-17 | 7 | 105 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.912 | 11 | 103 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.08E-13 | 12 | 100 | No hit | No description |
SMART | SM01019 | 1.6E-16 | 14 | 103 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.9E-9 | 25 | 94 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.0E-12 | 142 | 236 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 9.671 | 144 | 241 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.0E-15 | 145 | 241 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 4.12E-13 | 145 | 236 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.64E-12 | 145 | 239 | No hit | No description |
Pfam | PF02362 | 7.4E-12 | 149 | 238 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.4E-12 | 291 | 388 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.26E-11 | 295 | 388 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 8.529 | 296 | 393 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.8E-13 | 297 | 393 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.34E-8 | 297 | 391 | No hit | No description |
Pfam | PF02362 | 1.4E-10 | 301 | 390 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.14E-15 | 427 | 514 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.9E-17 | 427 | 518 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.379 | 431 | 530 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.0E-16 | 432 | 523 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.1E-14 | 433 | 514 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.28E-11 | 441 | 511 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 530 aa Download sequence Send to blast |
MTDAMFSSSA KPHFIKPMLP GFETYIVIPK AFYSNYLEGR QEGNAAELRS DATEITWKIK 60 IDGRRMTKGW EEFAVAHNLQ VDDILVFRHE GNLLFHVTPF GLSFCEILYS QRDEKDVKDT 120 TGKVTRSRTV KKNGKNECSS VDTDFVVPVT ASNQRVDSFY LPRGFTTSSG SSKLCNEIIL 180 IDEKDRPSTL KLRYNKSSNR FCVSRGWRAF CCRNGYRTGC FLRIILVRKG KTPVLRIFPL 240 ERDEDNIEKH SKKVKQEVEH EESVKEETNV ESGKLKRDRL LQKDPKNLCS TSQDTNFVVP 300 VTASNQRHDS FHLPKGLTTS SGLSKLCKKI IFMDQKGRSS ILDLSYSISD DRFTVRRGWK 360 AFCCRNEHKT GCFLRLILVQ NGKTPVLRIF PLERYENSIA KNSKKIKQEV EYESAKEEKN 420 LESLSLSDNS SFVVSVTVSN LSEDILHLPI RLSRSNLLDK KIHEIVLMNK EGRTWILSLK 480 YSKYSGRFRI TRGWKSFCEA NGQKPGCTFL LKLHLSMTRF DQDGVAWDKK |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
Genevisible | 246168_at | 0.0 | ||||
Expression Atlas | AT5G32460 | - | ||||
AtGenExpress | AT5G32460 | - | ||||
ATTED-II | AT5G32460 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT5G32460.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT5G32460 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB046432 | 1e-159 | AB046432.1 Arabidopsis thaliana DNA, chromosome 5 centromere region, clone:F22D12. | |||
GenBank | CP002688 | 1e-159 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. | |||
GenBank | F18O9 | 1e-159 | AF296831.1 Arabidopsis thaliana BAC F18O9. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001154745.1 | 0.0 | Transcriptional factor B3 family protein | ||||
Swissprot | F4KFT6 | 0.0 | REML3_ARATH; B3 domain-containing protein REM-like 3 | ||||
TrEMBL | R0F3W1 | 0.0 | R0F3W1_9BRAS; Uncharacterized protein | ||||
STRING | AT5G32460.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17423 | 9 | 10 | Representative plant | OGRP2682 | 2 | 31 |
Link Out ? help Back to Top | |
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Phytozome | AT5G32460.1 |
Entrez Gene | 3771028 |
iHOP | AT5G32460 |
wikigenes | AT5G32460 |
Publications ? help Back to Top | |||
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