PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo5G0018600
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family WRKY
Protein Properties Length: 655aa    MW: 69237.3 Da    PI: 5.4248
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo5G0018600genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.69.6e-32286343260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     +DgynWrKYGqK+vkgse+prsYY+Ct+++C+vkkkvers  ++ ++eitY+g+Hnh+k
  Spipo5G0018600 286 EDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSL-EGVTTEITYKGTHNHPK 343
                     7****************************************.9**************85 PP
2WRKY103.41.3e-32486544159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vkg+++prsYY+Ct +gC+v+k+ver+++d k v++tYeg+Hnh+
  Spipo5G0018600 486 LDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCTVRKHVERASHDLKSVITTYEGKHNHD 544
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.674280344IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.9E-28282344IPR003657WRKY domain
SuperFamilySSF1182901.05E-25282344IPR003657WRKY domain
SMARTSM007746.3E-35285343IPR003657WRKY domain
PfamPF031061.7E-24286342IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.8E-37471546IPR003657WRKY domain
SuperFamilySSF1182901.24E-28478546IPR003657WRKY domain
PROSITE profilePS5081138.124481546IPR003657WRKY domain
SMARTSM007747.5E-38486545IPR003657WRKY domain
PfamPF031067.0E-25487544IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009942Biological Processlongitudinal axis specification
GO:0030010Biological Processestablishment of cell polarity
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 655 aa     Download sequence    Send to blast
MAGIEEKLPL AGDWAPMSTS TQEISSSFVG EGAPPEEKVP TVLPEAGEED GGRGRGAPCE  60
PFSEVKPPTG PRFGARAGLA ERMAVRAGFN APKLNTDRIR SGDVGPFSSE VQSPYLTIPP  120
GLSPTSFLDS PVFVSNSLAQ PSPTTGKFAL EQLGNTSGGS VSAATDKSRY NSAADVASES  180
FVFKPRGELS SYISNAKNNI ASAMDHQQLP LSSKLPVPPG SPNLESPDAA GIAHPQDPLR  240
FRSEQKDSAG DLSDSLMGDE PVDFQQDVEA ENRGESPLVP TSAQSEDGYN WRKYGQKQVK  300
GSEYPRSYYK CTHPNCQVKK KVERSLEGVT TEITYKGTHN HPKPAAQSRR SGAGPSLHPF  360
GEAAADGPEA RGPGSVLEGE LSLAKNVDCQ NANLNPRTYN FAAELGNAEP GQGPEGLLFE  420
PAGGSDLPSN LSNEEEDDDR VGGVEEDELE SKRRKLDVSS MEVGASSRAV REPRVVVQTT  480
SEVDILDDGY RWRKYGQKVV KGNPNPRSYY KCTNPGCTVR KHVERASHDL KSVITTYEGK  540
HNHDVPAARS SSHAGTGPSG GGGTAPPPVH RRSLPGLVTH DGLPSFDGPP LPPLGSFAPA  600
GFPIVGQPTL WALQHGNGWP GTYRQHEDAA AATGGPFGSG AALLDGGWPR NTQG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-37286547878Probable WRKY transcription factor 4
2lex_A3e-37286547878Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00071PBMTransfer from AT5G56270Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010928175.11e-168probable WRKY transcription factor 2
RefseqXP_010928176.11e-168probable WRKY transcription factor 2
RefseqXP_010928177.11e-168probable WRKY transcription factor 2
RefseqXP_010928179.11e-168probable WRKY transcription factor 2
TrEMBLA0A1D1XC230.0A0A1D1XC23_9ARAE; Putative WRKY transcription factor 2
STRINGXP_008796561.11e-161(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP207538100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26440.12e-93WRKY DNA-binding protein 34