PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo5G0009900
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family ERF
Protein Properties Length: 204aa    MW: 22520.1 Da    PI: 5.0994
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo5G0009900genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.79.4e-164192155
             AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    s+y+GV +++k+g+W+A+I   +   g +k+ +lg + t eeAa a++ a+ + +g
  Spipo5G0009900 41 SKYRGVARHHKNGKWEARIGRvF---G-NKYLYLGIYATQEEAAMAYDMAAIEHRG 92
                    89****99**********99966...3.6**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.1E-114191IPR001471AP2/ERF domain
CDDcd000182.80E-2341102No hitNo description
SuperFamilySSF541713.2E-1741102IPR016177DNA-binding domain
SMARTSM003808.2E-2242106IPR001471AP2/ERF domain
PROSITE profilePS5103217.20142100IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-1642100IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
LRVNEQLSTY QGEMEEMEGL SREEYISFIR RKSSGFSRGV SKYRGVARHH KNGKWEARIG  60
RVFGNKYLYL GIYATQEEAA MAYDMAAIEH RGLAAVTNFD ISRYLRSLGQ SSNPNPNHPP  120
PPPMEIAGEP TCDGANPPPP FDMLKNARER SPATPPPEPQ LSCFSDDVHT YLDGCGGGGA  180
AAADGYDVIF GDLDSLEPTF FHCE
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017605062.16e-63PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 isoform X1
SwissprotQ94AN49e-51AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A3Q8D6873e-64A0A3Q8D687_9APIA; AP2/ERF transcription factor
STRINGVIT_11s0037g00870.t013e-62(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33193678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79700.27e-43AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]