PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G79700.2
Common NameWRI4
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family AP2
Protein Properties Length: 313aa    MW: 35411 Da    PI: 7.5952
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G79700.2genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.31.4e-1651110155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  s y+GV++++++gr++A+++d  s+n    k+ ++++lg ++ +e Aa+a++ a++k++g
  AT1G79700.2  51 SPYRGVTRHRWTGRYEAHLWDkNSWNDtqtKKgRQVYLGAYDEEEAAARAYDLAALKYWG 110
                  68*******************888876788557*************************98 PP
2AP252.51.2e-16153204155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  AT1G79700.2 153 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAIAYDIAAIEYRG 204
                  89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.69E-1751119IPR016177DNA-binding domain
SMARTSM003801.2E-2752124IPR001471AP2/ERF domain
PROSITE profilePS5103220.70552118IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.4E-1653118IPR001471AP2/ERF domain
PfamPF008471.4E-1253110IPR001471AP2/ERF domain
PRINTSPR003673.4E-65364IPR001471AP2/ERF domain
PfamPF008471.1E-11153204IPR001471AP2/ERF domain
CDDcd000182.73E-14153214No hitNo description
SuperFamilySSF541718.5E-18153214IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.9E-17154213IPR001471AP2/ERF domain
SMARTSM003801.1E-25154218IPR001471AP2/ERF domain
PROSITE profilePS5103218.241154212IPR001471AP2/ERF domain
PRINTSPR003673.4E-6194214IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0009873Biological Processethylene-activated signaling pathway
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:1904278Biological Processpositive regulation of wax biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000013anatomycauline leaf
PO:0000037anatomyshoot apex
PO:0000230anatomyinflorescence meristem
PO:0000293anatomyguard cell
PO:0009005anatomyroot
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009029anatomystamen
PO:0009030anatomycarpel
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0009052anatomyflower pedicel
PO:0020003anatomyplant ovule
PO:0020038anatomypetiole
PO:0020100anatomyhypocotyl
PO:0020137anatomyleaf apex
PO:0025022anatomycollective leaf structure
PO:0025281anatomypollen
PO:0001054developmental stagevascular leaf senescent stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007064developmental stageLP.12 twelve leaves visible stage
PO:0007095developmental stageLP.08 eight leaves visible stage
PO:0007098developmental stageLP.02 two leaves visible stage
PO:0007103developmental stageLP.10 ten leaves visible stage
PO:0007115developmental stageLP.04 four leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MAKVSGRSKK TIVDDEISDK TASASESASI ALTSKRKRKS PPRNAPLQRS SPYRGVTRHR  60
WTGRYEAHLW DKNSWNDTQT KKGRQVYLGA YDEEEAAARA YDLAALKYWG RDTLLNFPLP  120
SYDEDVKEME GQSKEEYIGS LRRKSSGFSR GVSKYRGVAR HHHNGRWEAR IGRVFGNKYL  180
YLGTYATQEE AAIAYDIAAI EYRGLNAVTN FDVSRYLNPN AAADKADSDS KPIRSPSREP  240
ESSDDNKSPK SEEVIEPSTS PEVIPTRRSF PDDIQTYFGC QDSGKLATEE DVIFDCFNSY  300
INPGFYNEFD YGP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.483980.0flower| root| silique
Expression -- Microarray ? help Back to Top
Source ID E-value
Genevisible261395_at0.0
Expression AtlasAT1G79700-
AtGenExpressAT1G79700-
ATTED-IIAT1G79700-
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Function -- GeneRIF ? help Back to Top
  1. These results support the hypothesis that the PRD gene is not a checkpoint for phosphate-starvation responses, but acts specifically as a regulator of root architectural responses to Pi starvation. [PRD]
    [PMID: 18506479]
  2. AP2-2 (At1g79700) is involved in mediating starvation-related and hormonal signals.
    [PMID: 22754341]
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G79700.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G79700
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1173000.0AK117300.1 Arabidopsis thaliana mRNA for unknown protein, complete cds, clone: RAFL16-86-I04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001077849.10.0Integrase-type DNA-binding superfamily protein
SwissprotA0JPZ80.0AP2L3_ARATH; AP2-like ethylene-responsive transcription factor At1g79700
TrEMBLA8MQS20.0A8MQS2_ARATH; Integrase-type DNA-binding superfamily protein
STRINGAT1G79700.20.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55327140
Representative plantOGRP11217209
Publications ? help Back to Top
  1. Krizek BA,Prost V,Macias A
    AINTEGUMENTA promotes petal identity and acts as a negative regulator of AGAMOUS.
    Plant Cell, 2000. 12(8): p. 1357-66
    [PMID:10948255]
  2. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  3. Dal Bosco C, et al.
    Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana.
    J. Biol. Chem., 2004. 279(2): p. 1060-9
    [PMID:14576160]
  4. Gong W, et al.
    Genome-wide ORFeome cloning and analysis of Arabidopsis transcription factor genes.
    Plant Physiol., 2004. 135(2): p. 773-82
    [PMID:15208423]
  5. Contento AL,Kim SJ,Bassham DC
    Transcriptome profiling of the response of Arabidopsis suspension culture cells to Suc starvation.
    Plant Physiol., 2004. 135(4): p. 2330-47
    [PMID:15310832]
  6. Nole-Wilson S,Tranby TL,Krizek BA
    AINTEGUMENTA-like (AIL) genes are expressed in young tissues and may specify meristematic or division-competent states.
    Plant Mol. Biol., 2005. 57(5): p. 613-28
    [PMID:15988559]
  7. Sun K,Cui Y,Hauser BA
    Environmental stress alters genes expression and induces ovule abortion: reactive oxygen species appear as ovules commit to abort.
    Planta, 2005. 222(4): p. 632-42
    [PMID:16133218]
  8. Kim S,Soltis PS,Wall K,Soltis DE
    Phylogeny and domain evolution in the APETALA2-like gene family.
    Mol. Biol. Evol., 2006. 23(1): p. 107-20
    [PMID:16151182]
  9. Coupe SA, et al.
    Systemic signalling of environmental cues in Arabidopsis leaves.
    J. Exp. Bot., 2006. 57(2): p. 329-41
    [PMID:16330523]
  10. Osuna D, et al.
    Temporal responses of transcripts, enzyme activities and metabolites after adding sucrose to carbon-deprived Arabidopsis seedlings.
    Plant J., 2007. 49(3): p. 463-91
    [PMID:17217462]
  11. Fujita M, et al.
    Identification of stress-tolerance-related transcription-factor genes via mini-scale Full-length cDNA Over-eXpressor (FOX) gene hunting system.
    Biochem. Biophys. Res. Commun., 2007. 364(2): p. 250-7
    [PMID:17937930]
  12. Camacho-Cristóbal JJ, et al.
    PRD, an Arabidopsis AINTEGUMENTA-like gene, is involved in root architectural changes in response to phosphate starvation.
    Planta, 2008. 228(3): p. 511-22
    [PMID:18506479]
  13. Skinner DJ,Gasser CS
    Expression-based discovery of candidate ovule development regulators through transcriptional profiling of ovule mutants.
    BMC Plant Biol., 2009. 9: p. 29
    [PMID:19291320]
  14. Hanada K, et al.
    Functional compensation of primary and secondary metabolites by duplicate genes in Arabidopsis thaliana.
    Mol. Biol. Evol., 2011. 28(1): p. 377-82
    [PMID:20736450]
  15. Vogel MO,Gomez-Perez D,Probst N,Dietz KJ
    Combinatorial signal integration by APETALA2/Ethylene Response Factor (ERF)-transcription factors and the involvement of AP2-2 in starvation response.
    Int J Mol Sci, 2012. 13(5): p. 5933-51
    [PMID:22754341]
  16. To A, et al.
    WRINKLED transcription factors orchestrate tissue-specific regulation of fatty acid biosynthesis in Arabidopsis.
    Plant Cell, 2012. 24(12): p. 5007-23
    [PMID:23243127]
  17. Kilaru A, et al.
    Oil biosynthesis in a basal angiosperm: transcriptome analysis of Persea Americana mesocarp.
    BMC Plant Biol., 2015. 15: p. 203
    [PMID:26276496]
  18. Elliott RC, et al.
    AINTEGUMENTA, an APETALA2-like gene of Arabidopsis with pleiotropic roles in ovule development and floral organ growth.
    Plant Cell, 1996. 8(2): p. 155-68
    [PMID:8742707]