PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo5G0000900
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family ARF
Protein Properties Length: 1042aa    MW: 113065 Da    PI: 6.3574
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo5G0000900genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.56.1e-24135236199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae+        + +++  ++l+ +d++g++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F +d   
  Spipo5G0000900 135 FCKTLTASDTSTHGGFSVPRRAAENVfppldysM-QPPA-QELQARDLHGNVWTFRHIYRGQPKRHLLTTGWSTFVSGKRLVAGDSVLFIRD--G 225
                     99*********************777*****954.5444.38************************************************54..6 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + el+++++r+
  Spipo5G0000900 226 KNELLLGIRRA 236
                     7778***9997 PP
2Auxin_resp103.13.4e-34261344183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aaha +++s F+v+YnPras+s Fv++++k+++a++  +v  G+Rf+m++e eds +r+ +Gt++g+ dldpvrW+nSkWrsL+
  Spipo5G0000900 261 AAHAYASRSRFTVFYNPRASPSAFVIPLAKYKTAIYsYHVDFGTRFRMMLEAEDSGKRSHTGTITGIGDLDPVRWKNSKWRSLQ 344
                     79*********************************978999*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.96E-41126264IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-42129249IPR015300DNA-binding pseudobarrel domain
CDDcd100176.75E-22134235No hitNo description
SMARTSM010191.3E-24135237IPR003340B3 DNA binding domain
PfamPF023623.3E-22135236IPR003340B3 DNA binding domain
PROSITE profilePS5086313.014135237IPR003340B3 DNA binding domain
PfamPF065077.7E-30261344IPR010525Auxin response factor
PfamPF023091.0E-8907993IPR033389AUX/IAA domain
PROSITE profilePS5174526.893909993IPR000270PB1 domain
SuperFamilySSF542771.08E-6925987No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1042 aa     Download sequence    Send to blast
MKAPGSAGGA AARGATSSEG GGETKGINEE LWYACAGPLV SLPPEGSLVV YFPQGHSEQV  60
AATMQRNFDA KIPSYPNLPW KLVCLLHSVS LHADPETDDV FAQMTLQPLN STNDEGVATT  120
SDLGQKPERS QTEFFCKTLT ASDTSTHGGF SVPRRAAENV FPPLDYSMQP PAQELQARDL  180
HGNVWTFRHI YRGQPKRHLL TTGWSTFVSG KRLVAGDSVL FIRDGKNELL LGIRRANRQP  240
SNISSSVLSN ESIQIGILAA AAHAYASRSR FTVFYNPRAS PSAFVIPLAK YKTAIYSYHV  300
DFGTRFRMML EAEDSGKRSH TGTITGIGDL DPVRWKNSKW RSLQVEWDEP VPGERRDRVS  360
VWEIELVQAP FVICSSPSFP GSRQPRRPGL LDDGGGGGDP SEMENLLKRA APWLGYEICF  420
DDSGSSNAVV PAGPYPSPRM NMQNLSLADP RKWGSAQNCA RLDASRPVEE AERLDQLSRV  480
PVPTSQRQPQ DTGPQKRPHW DCGQAYPSNQ SESQLSQSQV FSRSQIFPQQ QPQFQTPQAQ  540
RPGGGITLHQ THLQVPLQQF QDWQTQLQQL QRLPQQQSPL EQQPAPEPPQ QVLEQQTMVL  600
EVTQPTPGAQ SLPQHPRQRL FPYTTELPRS VAAQQSSGNT LPGAGGCRMT SGGSPPVLTE  660
EDASPFCFAS PPPTNSFPVL AQTASSIEAC RHAAMAAEIP GSFEDLAAAA GRTVNLQKPE  720
VKPSIPAVPK TQSQARVGAI ATQTSSYANT TARMDLPSSS SPGTSASLSP ADAAHIYPLS  780
SFSGQRSAVS RDAAADESAG PPDAGNSVIF GVSIDNLLGT PTPRDPLPGA KADASPGKED  840
RSRRHLGSAD MAHDYDPHQQ EAVSAMFAQS FGAVSDMAFS AVDSTISDGS VLTRPSSWTT  900
PAPPLQRRRT FTKVYKRGAV GRSIDVARYS GYDKLKRDLA RMFSIEGQLE DRQRMGWKLV  960
YVDHENDVLL VGDDPWEEFV NCVRCIKILS PQEVEQMSLD GGDLGTKADV VFPYQTYCNS  1020
DGPGEPRNPG NLAAVSYDNA A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1481936543388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009403030.10.0PREDICTED: auxin response factor 19-like isoform X1
RefseqXP_009403031.10.0PREDICTED: auxin response factor 19-like isoform X1
SwissprotQ6Z2W30.0ARFE_ORYSJ; Auxin response factor 5
TrEMBLA0A2R6R3Z00.0A0A2R6R3Z0_ACTCH; Auxin response factor
STRINGLPERR02G03100.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140935106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.11e-163auxin response factor 19