PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo4G0101000
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family ZF-HD
Protein Properties Length: 262aa    MW: 28055.6 Da    PI: 8.8656
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo4G0101000genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer98.45.4e-312175358
     ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58
                    +vrY eC+kNhAa lG++a+DGCgEfmp  ge+gt +alkCaACgCHRnFHR+e++
  Spipo4G0101000 21 SVRYWECMKNHAAGLGAQAFDGCGEFMPG-GEQGTLEALKCAACGCHRNFHRKEEV 75
                    689*************************9.999********************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257741.0E-182173IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047705.0E-282274IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015667.8E-282373IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.2232473IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.89E-19164231IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-30164232IPR009057Homeodomain-like
TIGRFAMsTIGR015653.4E-27174230IPR006455Homeodomain, ZF-HD class
CDDcd000860.00153175228No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MAEKNGGRPC GVGAAAAVGV SVRYWECMKN HAAGLGAQAF DGCGEFMPGG EQGTLEALKC  60
AACGCHRNFH RKEEVGGSVD YVPYDHVHPV HHPVLLYNAA ENSSSKVPSF FRHALPPMLS  120
LPGHAYRPLG LPPSLERSTG SETPPPPQQM QPQPFSYSAP PPDTSFGRER DRTRKRFRTK  180
FTPEQKEEMQ KFAEKVGWRI QRHDNDELQE FCSKVGVKRQ VLKVWMHNNK SALSGGGGGG  240
GGGGGGGGGP SKTDPSPAIP V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A4e-251732371680ZF-HD homeobox family protein
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1167179RERDRTRKRFRTK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1D1XIY16e-93A0A1D1XIY1_9ARAE; ZF-HD homeobox protein At4g24660
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39503269
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.14e-44homeobox protein 22