PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT4G24660.1 | ||||||||
Common Name | ATHB22, F22K18.140, HB22, MEE68, ZHD2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | ZF-HD | ||||||||
Protein Properties | Length: 220aa MW: 24022.8 Da PI: 8.0189 | ||||||||
Description | homeobox protein 22 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 107.3 | 9e-34 | 46 | 100 | 3 | 58 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 k+rY+eClkNhA+++GghavDGC+Efmps ge+gt +alkCaACgCHRnFHR+e+e AT4G24660.1 46 KIRYRECLKNHAVNIGGHAVDGCCEFMPS-GEDGTLDALKCAACGCHRNFHRKETE 100 79**************************9.999********************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 8.8E-31 | 47 | 99 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 6.0E-27 | 47 | 101 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 2.5E-29 | 48 | 98 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.366 | 49 | 98 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 3.8E-32 | 144 | 219 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.9E-20 | 145 | 218 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 2.1E-27 | 158 | 214 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000013 | anatomy | cauline leaf | ||||
PO:0000014 | anatomy | rosette leaf | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000230 | anatomy | inflorescence meristem | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0008019 | anatomy | leaf lamina base | ||||
PO:0009006 | anatomy | shoot system | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0009052 | anatomy | flower pedicel | ||||
PO:0020030 | anatomy | cotyledon | ||||
PO:0020038 | anatomy | petiole | ||||
PO:0020100 | anatomy | hypocotyl | ||||
PO:0020137 | anatomy | leaf apex | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001054 | developmental stage | vascular leaf senescent stage | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0001185 | developmental stage | plant embryo globular stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007064 | developmental stage | LP.12 twelve leaves visible stage | ||||
PO:0007095 | developmental stage | LP.08 eight leaves visible stage | ||||
PO:0007098 | developmental stage | LP.02 two leaves visible stage | ||||
PO:0007103 | developmental stage | LP.10 ten leaves visible stage | ||||
PO:0007115 | developmental stage | LP.04 four leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MNFEDQEEDM EMSGVNPPCG YDSLSGEGAT SSGGGGVGRS KGVGAKIRYR ECLKNHAVNI 60 GGHAVDGCCE FMPSGEDGTL DALKCAACGC HRNFHRKETE SIGGRAHRVP TYYNRPPQPH 120 QPPGYLHLTS PAAPYRPPAA SGDEEDTSNP SSSGGTTKRF RTKFTAEQKE KMLAFAERLG 180 WRIQKHDDVA VEQFCAETGV RRQVLKIWMH NNKNSLGKKP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 8e-45 | 148 | 215 | 8 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.2543 | 0.0 | cell culture| inflorescence |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
Genevisible | 254132_at | 0.0 | ||||
Expression Atlas | AT4G24660 | - | ||||
AtGenExpress | AT4G24660 | - | ||||
ATTED-II | AT4G24660 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in flowers and, to a lower extent, in inflorescence, stems and leaves. {ECO:0000269|PubMed:16428600}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein. Putative transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT4G24660.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Interaction ? help Back to Top | ||||||
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Source | Intact With | |||||
IntAct | Search Q9SB61 |
Phenotype -- Disruption Phenotype ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | DISRUPTION PHENOTYPE: Arrested at early embryo stages. {ECO:0000269|PubMed:15634699}. |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT4G24660 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF439841 | 0.0 | AF439841.1 Arabidopsis thaliana AT4g24660/F22K18_140 mRNA, complete cds. | |||
GenBank | AL035356 | 0.0 | AL035356.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F22K18 (ESSAII project). | |||
GenBank | AL161561 | 0.0 | AL161561.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 61. | |||
GenBank | AY125563 | 0.0 | AY125563.1 Arabidopsis thaliana AT4g24660/F22K18_140 mRNA, complete cds. | |||
GenBank | CP002687 | 0.0 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_194197.1 | 1e-166 | homeobox protein 22 | ||||
Swissprot | Q9SB61 | 1e-167 | ZHD2_ARATH; Zinc-finger homeodomain protein 2 | ||||
TrEMBL | A0A178UZW1 | 1e-165 | A0A178UZW1_ARATH; ZHD2 | ||||
STRING | AT4G24660.1 | 1e-166 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4505 | 24 | 54 | Representative plant | OGRP91 | 16 | 237 |
Link Out ? help Back to Top | |
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Phytozome | AT4G24660.1 |
Entrez Gene | 828568 |
iHOP | AT4G24660 |
wikigenes | AT4G24660 |