PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo4G0057000

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

TCP

Protein Properties

Length: 286aa MW: 29608 Da PI: 9.655

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo4G0057000	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	124.7	1e-38	24	106	2	84
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasn 84 a+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+pai +tgt++ +as++++++ s+s++ Spipo4G0057000 24 APKRSSNKDRHTKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPAIVSATGTGTVPASAMTSAAGSVSHQG 106 789***************************************************************99988844444444332 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.0E-32	29	170	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.559	30	84	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MASAGDRDNQ GGAVNEKEEG KKLAPKRSSN KDRHTKVDGR GRRIRMPALC AARIFQLTRE 60 LGHKSDGETI QWLLQQAEPA IVSATGTGTV PASAMTSAAG SVSHQGATVS AGLHQKVDEL 120 GESIGSAARA NWAMLGGAVG RWPQAGGLTP GFIHATAIPS TSNLGSAAAA AAGFMPRIGV 180 HGLEMQGAGL GPMGFASILG GGAQQLPGLE LGLSQEGHIG VLNPQSLSNY YRQMGQGRGG 240 GGGGGSEQMQ HQQLPHRHHE RLPQQQQAQR QEQQSPLEKD DSQSS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269\|PubMed:12631321, ECO:0000269\|PubMed:16123132}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010249094.1	1e-107	PREDICTED: transcription factor TCP20-like
Refseq	XP_010249095.1	1e-107	PREDICTED: transcription factor TCP20-like
Swissprot	Q9LSD5	2e-66	TCP20_ARATH; Transcription factor TCP20
TrEMBL	A0A1U7ZCX5	1e-105	A0A1U7ZCX5_NELNU; transcription factor TCP20-like
STRING	XP_010249094.1	1e-106	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2864	32	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27010.1	2e-67	TCP family protein

Link Out ? help Back to Top
Phytozome	Spipo4G0057000

Publications ? help Back to Top
Zhu P, et al. Arabidopsis small nucleolar RNA monitors the efficient pre-rRNA processing during ribosome biogenesis. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(42): p. 11967-11972 [PMID:27708161] Wu JF, et al. LWD-TCP complex activates the morning gene CCA1 in Arabidopsis. Nat Commun, 2016. 7: p. 13181 [PMID:27734958] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Guan P Dancing with Hormones: A Current Perspective of Nitrate Signaling and Regulation in Arabidopsis. Front Plant Sci, 2017. 8: p. 1697 [PMID:29033968] Zhang N, et al. MOS1 functions closely with TCP transcription factors to modulate immunity and cell cycle in Arabidopsis. Plant J., 2018. 93(1): p. 66-78 [PMID:29086441] Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development. Plant Physiol., 2018. 176(2): p. 1694-1708 [PMID:29133375] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692]