PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo4G0054800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 157aa MW: 17141.5 Da PI: 8.2447 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 75.2 | 5e-24 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri++ +r v+fskRr g+lKKA EL vLCdaev v++fs++gkl +ss Spipo4G0054800 10 RIDDGARRMVSFSKRRSGLLKKARELAVLCDAEVGVVVFSPKGKLSHFSS 59 89*********************************************996 PP | |||||||
2 | K-box | 21.2 | 1.2e-08 | 59 | 106 | 34 | 81 |
K-box 34 eqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelq 81 +q +ll ++L + +++eL +Le+++e l+kiR +K+ ll+++ +lq Spipo4G0054800 59 SQSRLLDDGLIEHDINELTKLEDKVECELRKIRLRKTALLKDSGANLQ 106 56777888899999***************************9988887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 8.0E-32 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 26.955 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-23 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.27E-24 | 3 | 63 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.6E-23 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-23 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-23 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence Send to blast |
MVRGKVKLQR IDDGARRMVS FSKRRSGLLK KARELAVLCD AEVGVVVFSP KGKLSHFSSQ 60 SRLLDDGLIE HDINELTKLE DKVECELRKI RLRKTALLKD SGANLQDPVM VTDGEGTDEE 120 DEHRSSQRAP ESGASSSSNA ASPPGPLRTL QLFVDA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014622593.1 | 2e-27 | agamous-like MADS-box protein AGL16 isoform X7 | ||||
Swissprot | Q9SZJ6 | 1e-22 | AGL21_ARATH; Agamous-like MADS-box protein AGL21 | ||||
TrEMBL | A0A1D1XXJ4 | 1e-31 | A0A1D1XXJ4_9ARAE; MADS-box transcription factor 56 | ||||
STRING | Bra029424.1-P | 6e-29 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37940.1 | 2e-24 | AGAMOUS-like 21 |
Link Out ? help Back to Top | |
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Phytozome | Spipo4G0054800 |
Publications ? help Back to Top | |||
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