PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo4G0050000
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family C3H
Protein Properties Length: 411aa    MW: 44936.7 Da    PI: 8.5982
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo4G0050000genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH352.4e-112752227
                    -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                    +++ C+++ rtG Ck+G +C+F+H+p
  Spipo4G0050000 27 GEPDCSYYIRTGLCKFGLTCRFNHPP 52
                    5799********************97 PP
2zf-CCCH38.91.4e-127397327
                    S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                    +++C+++++tGtCk+G++CkF+H++
  Spipo4G0050000 73 QPECQYYLKTGTCKFGATCKFHHPR 97
                    799********************96 PP
3zf-CCCH37.93.1e-12119143327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++C +++rtG Ck+Gd+CkF+H++
  Spipo4G0050000 119 EKECAYYLRTGSCKFGDTCKFHHPQ 143
                     679********************97 PP
4zf-CCCH36.67.3e-12283308227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++ +C+++++tG Ck+G+ C+F+H++
  Spipo4G0050000 283 GEQECQYYMKTGDCKFGAVCRFHHPR 308
                     6789********************96 PP
5zf-CCCH35.51.7e-11329354227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++ +C f++r+G+Ck+G++CkF H++
  Spipo4G0050000 329 GETPCLFYLRYGICKFGSNCKFDHPM 354
                     7889********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.2812553IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-42552IPR000571Zinc finger, CCCH-type
PfamPF006427.8E-82752IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-53053IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.3567098IPR000571Zinc finger, CCCH-type
SMARTSM003567.7E-67097IPR000571Zinc finger, CCCH-type
PfamPF006425.8E-107397IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-67398IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.8E-57697IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-7116144IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-5116143IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.835116144IPR000571Zinc finger, CCCH-type
PfamPF006425.2E-10119143IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-5122142IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-5281308IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.911281309IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-8283308IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.93E-6284310IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.5E-5287309IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-6327354IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.746327355IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-9329354IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-6330355IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MREDIMWQGN MRADEAVERG PYPERLGEPD CSYYIRTGLC KFGLTCRFNH PPNRMLAAAA  60
ARFRGVFPER VGQPECQYYL KTGTCKFGAT CKFHHPRDIA ADSGRAHLNV LGYPLRPNEK  120
ECAYYLRTGS CKFGDTCKFH HPQPSNAVVS IRGSSVYTTV PSPGIPGQQP YSGGLTNWPL  180
SRASFITGTR WQGPSSYAQL ILPQGMVQVP GWNAYPGQMG SAVSSPGNQQ QTPPRTGQFY  240
GSSQQSEITG SGGQGSVSSY QVSSVPMGVY AFHKENLFPE RPGEQECQYY MKTGDCKFGA  300
VCRFHHPRER VIPVPDCILS PLGLPLRPGE TPCLFYLRYG ICKFGSNCKF DHPMGAFTYG  360
LSSSSSADQS GMRHPMGSLP SGTPPLSSEG PIEAAAGKSR RAEDNRQGEH *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019704167.10.0zinc finger CCCH domain-containing protein ZFN-like isoform X1
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A1D1Z7260.0A0A1D1Z726_9ARAE; Zinc finger CCCH domain-containing protein ZFN-like
STRINGXP_008812314.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-148zinc finger protein 1