PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo4G0049200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | ERF | ||||||||
Protein Properties | Length: 185aa MW: 21091.8 Da PI: 10.2135 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 35.3 | 2.9e-11 | 68 | 109 | 3 | 51 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 +GV++ k+ +W A I++ +k+++lg+ g+ eeAa ++++a+ Spipo4G0049200 68 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGSQEEAAHLYDRAAF 109 79**98..47*********4.....5********************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 8.755 | 45 | 122 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.3E-4 | 67 | 124 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-8 | 68 | 112 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.7E-5 | 68 | 110 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.6E-6 | 69 | 114 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MVKRKKGGVL FVPRVQVDVS EAFPASVDVS SSSYKKEEPA LQEYQVPGVK RRKRHRRKHV 60 ENQEPCTMRG VYFKNMKWQA AIKVDKKQIH LGTVGSQEEA AHLYDRAAFM CGREPNFELS 120 EEEKQELRQF KWEEFLEMTR RAISSKKHQR RAGSGPRRKA GTQPQSDGED ARAASASDDV 180 DGDR* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019161297.1 | 1e-71 | PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X1 | ||||
Refseq | XP_019161301.1 | 1e-71 | PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X1 | ||||
Refseq | XP_019161307.1 | 1e-71 | PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X1 | ||||
Swissprot | Q56XP9 | 4e-46 | ERFL1_ARATH; Ethylene-responsive transcription factor-like protein At4g13040 | ||||
TrEMBL | A0A1D1YB75 | 9e-93 | A0A1D1YB75_9ARAE; Ethylene-responsive transcription factor-like protein At4g13040 | ||||
STRING | XP_010242670.1 | 2e-66 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7516 | 35 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13040.1 | 6e-48 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Spipo4G0049200 |