PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | AT4G13040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 226aa MW: 26400.1 Da PI: 9.9525 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 38.8 | 2.3e-12 | 117 | 158 | 3 | 51 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 +GV++ k + +W A I++ +k+++lg+f + eeAa+++++a+ AT4G13040.1 117 MRGVYY-K-NMKWQAAIKVE-----KKQIHLGTFSSQEEAARLYDRAAF 158 79**96.5.7*********6.....6********************985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 9.374 | 105 | 171 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.3E-5 | 116 | 173 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.2E-6 | 116 | 159 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.62E-10 | 117 | 161 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 4.15E-12 | 118 | 169 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 7.6E-9 | 118 | 163 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009873 | Biological Process | ethylene-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PO Term | PO Category | PO Description | ||||
PO:0000293 | anatomy | guard cell |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 226 aa Download sequence Send to blast |
MVSLRRRRLL GLCCGPNGYV TPLPFLTAEE MITGIPNPNA RAAYNPGPAE TVTTVIVEKK 60 AIEERSRRTR SKHMHFRSDY SDISPVNSDS ISPKYQPPKR RKQHRRKRVH NQEPCLMRGV 120 YYKNMKWQAA IKVEKKQIHL GTFSSQEEAA RLYDRAAFMC GREPNFELSE EVIRELKQQS 180 WEEFLNCTRR TITNKKPKSR IEHEDTKINA SMPHQPEEEE QDSDKM |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 98 | 107 | KRRKQHRRKR |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
At.33424 | 0.0 | seed |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
GEO | 145340157 | 0.0 | ||||
Expression Atlas | AT4G13040 | - | ||||
AtGenExpress | AT4G13040 | - |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Function -- GeneRIF ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | AT4G13040.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Interaction ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Intact With | |||||
BioGRID | AT5G11260 |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
T-DNA Express | AT4G13040 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK221624 | 0.0 | AK221624.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL07-94-D09. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001154229.1 | 1e-170 | Integrase-type DNA-binding superfamily protein | ||||
Refseq | NP_193040.2 | 1e-170 | Integrase-type DNA-binding superfamily protein | ||||
Swissprot | Q56XP9 | 1e-171 | ERFL1_ARATH; Ethylene-responsive transcription factor-like protein At4g13040 | ||||
TrEMBL | F4JS76 | 1e-169 | F4JS76_ARATH; Integrase-type DNA-binding superfamily protein | ||||
STRING | AT4G13040.3 | 1e-170 | (Arabidopsis thaliana) |
Link Out ? help Back to Top | |
---|---|
Phytozome | AT4G13040.1 |
Entrez Gene | 826918 |
iHOP | AT4G13040 |
wikigenes | AT4G13040 |