PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo4G0043400
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family WRKY
Protein Properties Length: 594aa    MW: 63682.6 Da    PI: 6.2784
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo4G0043400genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1017.1e-32219275259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     dD +nWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers+ d+++ ei+Y+g+Hnh+
  Spipo4G0043400 219 DDSFNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSH-DGRIKEIIYRGKHNHP 275
                     8****************************************.***************8 PP
2WRKY104.17.8e-33399457159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vkg+++prsYY+Ct +gC+v+k+ver+a+d k v++tYeg+Hnhe
  Spipo4G0043400 399 LDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCSVRKHVERAAHDLKSVITTYEGKHNHE 457
                     59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.204213277IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.5E-28215276IPR003657WRKY domain
SuperFamilySSF1182905.23E-25216276IPR003657WRKY domain
SMARTSM007741.0E-35218276IPR003657WRKY domain
PfamPF031062.6E-24219275IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.8E-37384459IPR003657WRKY domain
SuperFamilySSF1182902.62E-28391459IPR003657WRKY domain
PROSITE profilePS5081137.516394459IPR003657WRKY domain
SMARTSM007741.1E-37399458IPR003657WRKY domain
PfamPF031064.4E-25400457IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 594 aa     Download sequence    Send to blast
MWSFDPPSAG TFKIGEKSGG LDDGDGGGGA GQITDAERSS DGTTPPLLPA AAPLLQPSPA  60
TNSNKSIAER RAARGGFSPP RINTARFRCG GSPLPSPAVA RSPFLTIPPG LSPTALLDSP  120
VFLMSSQAPP SPTTGTLALA PQNLDSTAGT PLNLHEQGVG GDQHGLGSSD AMGCCQNLSS  180
SSLETLAELE ESMKTGDGSL QPRGREQGEG LPPAERPSDD SFNWRKYGQK QVKGSEYPRS  240
YYKCTHPNCP VKKKVERSHD GRIKEIIYRG KHNHPRAQPP RRTATPDEPR SSYVKSEGES  300
VSVLTDLSDP LSAAIERHLG ELESSDTLEL SSVLADGEED DRPAEEEDRA AAFEGDDGDD  360
EPDCRRREGE SFLTECGPAS RGIREPRVVV QTESEVDILD DGYRWRKYGQ KVVKGNPNPR  420
SYYKCTNPGC SVRKHVERAA HDLKSVITTY EGKHNHEVPI SRSSSQSSSG APPPSGGPRA  480
TIGAESSIYG EFLDAHHMKR KLVLPSEFPT YLGGVSSCFP SRPLTPPELH RMAGISNFGP  540
EFPMSFPMDI HRAPNLEANH GRSAGDLRLL KLPKKEQEDN GLFGSGLGAG RSH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-36219459877Probable WRKY transcription factor 4
2lex_A4e-36219459877Probable WRKY transcription factor 4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010268325.11e-130PREDICTED: probable WRKY transcription factor 34 isoform X2
TrEMBLA0A1D1Y2X11e-169A0A1D1Y2X1_9ARAE; Putative WRKY transcription factor 2
STRINGXP_008370928.11e-114(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP207538100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.12e-44WRKY DNA-binding protein 2