PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo4G0015000
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family M-type_MADS
Protein Properties Length: 214aa    MW: 23592 Da    PI: 10.058
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo4G0015000genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.71.1e-261059251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    +ien + rqvtfskRr g++KKA+EL vLCda+v +i+fsst +lye+ss
  Spipo4G0015000 10 KIENVTSRQVTFSKRRRGLFKKAHELAVLCDADVGLIVFSSTHRLYEFSS 59
                    69**********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.5E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.885161IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.4E-30282IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-26323IPR002100Transcription factor, MADS-box
CDDcd002651.18E-36370No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.2E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-263859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MTREKIKIRK IENVTSRQVT FSKRRRGLFK KAHELAVLCD ADVGLIVFSS THRLYEFSST  60
SNMTEIFRKY VGDPKNARKH HQPAADLTEA ASNATLRKEI TDNKKLLRLA PLSASPLHFQ  120
GEKIMEELRQ LQRKGDQLVE QNELLRQQVA EMLTTKGDKM ALALTFGDAS QEGGPPPPPP  180
PFRPSAAAAV GSSGGPPECD GTSFDVSLKL GYF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-18190187MEF2C
5f28_B1e-18190187MEF2C
5f28_C1e-18190187MEF2C
5f28_D1e-18190187MEF2C
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012845116.13e-49PREDICTED: MADS-box protein JOINTLESS-like
STRINGMigut.H02293.1.p3e-47(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.12e-38MIKC_MADS family protein