PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo3G0038900
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family C2H2
Protein Properties Length: 379aa    MW: 41340.9 Da    PI: 9.2432
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo3G0038900genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.81.9e-056991123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C++C+k F r  nL+ H r H
  Spipo3G0038900 69 FVCEICHKGFQRDQNLQLHRRGH 91
                    89*******************88 PP
2zf-C2H215.64.7e-05145167123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC+ C+k++  +s+Lk H +t+
  Spipo3G0038900 145 WKCERCSKRYAVQSDLKAHSKTC 167
                     58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.3E-56891IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.27E-66891No hitNo description
PfamPF128740.0116991No hitNo description
SMARTSM003550.0466991IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.6376991IPR007087Zinc finger, C2H2
PROSITE patternPS0002807191IPR007087Zinc finger, C2H2
SMARTSM00355240110140IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.1E-5133166IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.27E-6140165No hitNo description
PROSITE profilePS501578.517145173IPR007087Zinc finger, C2H2
SMARTSM0035596145165IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MLYRMILLPS GLYLYPKRVN WCKKTLRDPA RSSCGAKAGS YLNEEYVEDN PTAEVIALSP  60
RSLMATNRFV CEICHKGFQR DQNLQLHRRG HNLPWKLRQR TSTEARKRVY VCPEVTCVHH  120
DPNRALGDLT GIKKHFCRKH GEKNWKCERC SKRYAVQSDL KAHSKTCGSR EYKCDCGAVF  180
SRRDGFVTHR AFCNILAEES SKTSRRLTES RGRTVDVPVQ NDFGSGSSAG ISEFIDGVDH  240
SLRGLSDDLI CSSSGPASIA SGVLSGIMAE AKSSALMMAS AHMSATALLQ RAAQAGSRAS  300
DNMNASSTPA ALSSWMQQPY VFRSHFTGLA CGGLGNQFFN TSSGGGDGGS VVPGNQQCFQ  360
VVVPAKVSAF MKDFASDI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C8e-29141204366Zinc finger protein JACKDAW
5b3h_F8e-29141204366Zinc finger protein JACKDAW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008800868.11e-111protein indeterminate-domain 2-like
TrEMBLA0A2H3YM781e-109A0A2H3YM78_PHODC; protein indeterminate-domain 2-like
STRINGXP_008800868.11e-110(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.11e-95C2H2-like zinc finger protein