PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo3G0031800
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family ERF
Protein Properties Length: 221aa    MW: 24411.2 Da    PI: 7.6243
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo3G0031800genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.21.1e-1964112355
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     y+G+r+++ +g+W+AeIrdp     +  r++lg++ ++eeAa+a+++a+++++g
  Spipo3G0031800  64 YRGIRRRP-WGKWAAEIRDPM----KgVRVWLGTYQSPEEAARAYDRAARRIRG 112
                     9*******.**********84....35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.64463120IPR001471AP2/ERF domain
SMARTSM003801.2E-3863126IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-2263121IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.9E-3163122IPR001471AP2/ERF domain
PfamPF008474.4E-1364112IPR001471AP2/ERF domain
CDDcd000184.66E-1964122No hitNo description
PRINTSPR003671.3E-106475IPR001471AP2/ERF domain
PRINTSPR003671.3E-1086102IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MCGGAIVSDF VPSHSIRGKR VITGAEPWAL EHFPEDRPTA AAAVAESPTP PEEERKKRVR  60
KNLYRGIRRR PWGKWAAEIR DPMKGVRVWL GTYQSPEEAA RAYDRAARRI RGSKAKLNFT  120
DSDEDGGTAA HRLEQPQFQR RHQTHLQAAP PSSQLPEDDM QALESYMKFL DEDLYSPGDG  180
GAAATPPSSS GTPPTSAEAA SALEQWRYNN ALNPDCLNLF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-2164119662ATERF1
3gcc_A6e-2164119662ATERF1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15670KRVRKNLYRGIRRRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008784773.24e-42LOW QUALITY PROTEIN: ethylene-responsive transcription factor ERF071-like
STRINGXP_004152238.12e-40(Cucumis sativus)
STRINGXP_004156828.12e-40(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115472540
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.11e-32ERF family protein