PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo3G0031700
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family ERF
Protein Properties Length: 267aa    MW: 28899.5 Da    PI: 8.0682
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo3G0031700genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.77e-1974122355
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     y+G+r+++ +g+W+AeIrdp     +  r++lg+f taeeAa+a+++ +++++g
  Spipo3G0031700  74 YRGIRQRP-WGKWAAEIRDPM----KgVRVWLGTFNTAEEAARAYDREARRIRG 122
                     9*******.**********84....35************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.22E-2273131IPR016177DNA-binding domain
PROSITE profilePS5103223.51273130IPR001471AP2/ERF domain
SMARTSM003804.3E-3973136IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-3273131IPR001471AP2/ERF domain
PfamPF008471.2E-1174122IPR001471AP2/ERF domain
PRINTSPR003676.3E-127485IPR001471AP2/ERF domain
CDDcd000183.72E-3174131No hitNo description
PRINTSPR003676.3E-1296112IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0034059Biological Processresponse to anoxia
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MCGGAILSDL IPSRHGRSGC AAAAEFWPES CFVKKQQQQQ QQDPSTGFFS PVPFDVGERV  60
GGRVGKKRER KNLYRGIRQR PWGKWAAEIR DPMKGVRVWL GTFNTAEEAA RAYDREARRI  120
RGKKAKVNFP NEELPHFRQE PRRPHFTSLA FAAPAPPPPT AVAAVATAAP NPLSSAHERD  180
AEGGANPGPS GGAGGSEAKK LSEELQAFEA YMKFLDIPYM EGGVAADAAA EPQPSSELNL  240
SLPSTSYPQE ATLELWSFDD GLPVVI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2174130663ATERF1
3gcc_A2e-2174130663ATERF1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010921624.12e-63ethylene-responsive transcription factor ERF071
TrEMBLA0A2H3XJL21e-60A0A2H3XJL2_PHODC; LOW QUALITY PROTEIN: ethylene-responsive transcription factor ERF071-like
STRINGXP_008784773.12e-60(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115472540
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.12e-24ERF family protein