PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo3G0014200
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family WOX
Protein Properties Length: 263aa    MW: 28470.8 Da    PI: 8.2505
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo3G0014200genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox48.21.9e-152888257
                    T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    r+R+t+++eq+ +Le+ F++   +p +++  ++ k l    ++ +++V++WFqNrR + ++
  Spipo3G0014200 28 RTRWTPKPEQILILESIFNSgMVNPPKDDTVRIRKLLerfgSVGDANVFYWFQNRRSRSRR 88
                    89*****************99*************************************997 PP
2Wus_type_Homeobox105.82.7e-342790265
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       +rtRWtP+peQi iLe++++sG+++P+k+ + ri++ Le++G ++d+NVfyWFQNr++R+r++q
     Spipo3G0014200 27 VRTRWTPKPEQILILESIFNSGMVNPPKDDTVRIRKLLERFGSVGDANVFYWFQNRRSRSRRRQ 90
                       589***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.9E-8889IPR009057Homeodomain-like
SuperFamilySSF466892.01E-132494IPR009057Homeodomain-like
PROSITE profilePS5007111.4182489IPR001356Homeobox domain
SMARTSM003891.0E-52693IPR001356Homeobox domain
PfamPF000465.1E-132888IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009734Biological Processauxin-activated signaling pathway
GO:0048830Biological Processadventitious root development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MEDQARKAKS RPHGSAGDVV FPAAERVRTR WTPKPEQILI LESIFNSGMV NPPKDDTVRI  60
RKLLERFGSV GDANVFYWFQ NRRSRSRRRQ RQLQAGIAAE PRALSATDGG GGGGAARCDV  120
TLPGAFANSS TNSSFGAFVP SSTSDVSIGT NFSPDIFADD SAEDLFSISR QMGFTETIDQ  180
SRRYAPPPAR HHGASSFHYQ SGLITVFING IPQEVPSGPF DTKKVFGQDA MLLHSSGELV  240
PMNDCGTLFS ALHNGESYIL LS*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in crown root development (PubMed:26307379, PubMed:29740464). Promotes the development of crown roots (both initiation and elongation), main components of the fibrous root system (PubMed:26307379, PubMed:29740464). Regulates the expression of genes required for crown root development, and hormone-responsive genes involved in cytokinin signaling (e.g. RR1, RR2, RR3 and RR4), and auxin signaling (e.g. IAA5, IAA11, IAA23 and IAA31) (PubMed:26307379). Functions dowstream of the auxin biosynthetic genes YUCCA1 in the promotion of crown root development (PubMed:29740464). {ECO:0000269|PubMed:26307379, ECO:0000269|PubMed:29740464}.
UniProtTranscription factor which may be involved in developmental processes. Promotes the development of crown roots (both initiation and elongation), main components of the fibrous root system, by regulating the expression of genes required for crown root development and hormone-responsive genes involved in cytokinin (e.g. RR1, RR2, RR3 and RR4) and auxin (e.g. IAA5, IAA11, IAA23 and IAA31) signaling. {ECO:0000250|UniProtKB:Q0D3I7}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00330DAPTransfer from AT3G03660Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022719652.12e-73WUSCHEL-related homeobox 11-like
SwissprotB8B6445e-57WOX11_ORYSI; WUSCHEL-related homeobox 11
SwissprotQ0D3I75e-57WOX11_ORYSJ; WUSCHEL-related homeobox 11
TrEMBLA0A1D1XY958e-81A0A1D1XY95_9ARAE; WUSCHEL-related homeobox 11 (Fragment)
STRINGXP_008781307.11e-71(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP107837109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03660.16e-53WUSCHEL related homeobox 11
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhao Y, et al.
    The Interaction between Rice ERF3 and WOX11 Promotes Crown Root Development by Regulating Gene Expression Involved in Cytokinin Signaling.
    Plant Cell, 2015. 27(9): p. 2469-83
    [PMID:26307379]
  3. Zhang T, et al.
    The YUCCA-Auxin-WOX11 Module Controls Crown Root Development in Rice.
    Front Plant Sci, 2018. 9: p. 523
    [PMID:29740464]