PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT3G03660.1 | ||||||||
Common Name | T12J13.6, WOX11 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | WOX | ||||||||
Protein Properties | Length: 268aa MW: 29419.5 Da PI: 6.999 | ||||||||
Description | WUSCHEL related homeobox 11 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 49.6 | 6.6e-16 | 31 | 91 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++++eq+ +Le+ F++ +p +ee ++ k l + +++V++WFqNrR + ++ AT3G03660.1 31 RSRWSPKPEQILILESIFHSgMVNPPKEETVRIRKMLekfgAVGDANVFYWFQNRRSRSRR 91 89*****************99*************************************997 PP | |||||||
2 | Wus_type_Homeobox | 106.8 | 1.3e-34 | 30 | 93 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RW+P+peQi iLe++++sG+++P+kee+ ri+++Le++G+++d+NVfyWFQNr++R+r++q AT3G03660.1 30 VRSRWSPKPEQILILESIFHSGMVNPPKEETVRIRKMLEKFGAVGDANVFYWFQNRRSRSRRRQ 93 589***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.4E-9 | 9 | 92 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.07E-14 | 23 | 98 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 11.645 | 27 | 92 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.5E-7 | 29 | 96 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.1E-13 | 31 | 91 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0048830 | Biological Process | adventitious root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 268 aa Download sequence Send to blast |
MDQEQTPHSP TRHSRSPPSS ASGSTSAEPV RSRWSPKPEQ ILILESIFHS GMVNPPKEET 60 VRIRKMLEKF GAVGDANVFY WFQNRRSRSR RRQRQLQAAA AAADATTNTC DQTMMVSNSL 120 PHHSGSDLGF GGCSTSSNYL FASSSSSYGG GCDNQSNSGM ENLLTMSGQM SYHEATHHHY 180 QNHSSNVTSI LCPSDQNSNF QYQQGAITVF INGVPTEVTR GGIDMKATFG EDLVLVHSSG 240 VPLPTDEFGF LMHSLQHGEA YFLVPRQT |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.40942 | 0.0 | seed |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
Genevisible | 259223_at | 0.0 | ||||
Expression Atlas | AT3G03660 | - | ||||
AtGenExpress | AT3G03660 | - | ||||
ATTED-II | AT3G03660 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | Encodes a WUSCHEL-related homeobox gene family member with 65 amino acids in its homeodomain. Proteins in this family contain a sequence of eight residues (TLPLFPMH) downstream of the homeodomain called the WUS box. | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Function -- GeneRIF ? help Back to Top | ||||||
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Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00330 | DAP | 27203113 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT3G03660.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT3G03660 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY251402 | 0.0 | AY251402.1 Arabidopsis thaliana WOX11 protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_187016.2 | 0.0 | WUSCHEL related homeobox 11 | ||||
Swissprot | Q6X7J3 | 0.0 | WOX11_ARATH; WUSCHEL-related homeobox 11 | ||||
TrEMBL | A0A1I9LND7 | 0.0 | A0A1I9LND7_ARATH; WUSCHEL related homeobox 11 | ||||
STRING | AT3G03660.2 | 1e-174 | (Arabidopsis thaliana) |
Link Out ? help Back to Top | |
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Phytozome | AT3G03660.1 |
Entrez Gene | 821196 |
iHOP | AT3G03660 |
wikigenes | AT3G03660 |