PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo3G0007500
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family ERF
Protein Properties Length: 274aa    MW: 30366.5 Da    PI: 6.0665
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo3G0007500genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.35.2e-20122171255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      ++GVr+++ +grW+AeIrdp++   rkr +lg+f+taeeAa  ++ a+++l g
  Spipo3G0007500 122 SFRGVRRRP-WGRWAAEIRDPVQ---RKRLWLGTFDTAEEAATVYDSAALRLQG 171
                     59*******.**********755...5************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381232.4E-5715270IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000185.68E-29121181No hitNo description
PROSITE profilePS5103224.421122179IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.6E-30122180IPR001471AP2/ERF domain
SMARTSM003801.7E-34122185IPR001471AP2/ERF domain
PRINTSPR003673.5E-10123134IPR001471AP2/ERF domain
SuperFamilySSF541715.89E-22123180IPR016177DNA-binding domain
PfamPF008471.9E-12123171IPR001471AP2/ERF domain
PRINTSPR003673.5E-10145161IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MSWELADHPP GKFASGMASV KFSEHSLCAR TTTSARHRRV RREDSDEFPP FRRRIVRVFF  60
TDEDATDSSS SEEDDGVSIP RLRVKRYVTE IDVNVVASHR RRKTVSSTRT GPKDASGSRR  120
KSFRGVRRRP WGRWAAEIRD PVQRKRLWLG TFDTAEEAAT VYDSAALRLQ GANAVTNFPA  180
AEGASGGAPA DGEADKADSS PCFSSSYSSP TSVLRFNDSP FDCFDFSDLG AFGPSAESFT  240
LADLHLPKRY CWEEDDFAEF DAADFSLEPV VTL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-19121179463ATERF1
3gcc_A8e-19121179463ATERF1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118128RRKSFRGVRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020705822.11e-64ethylene-responsive transcription factor ERF069-like
TrEMBLA0A1D1XTG12e-69A0A1D1XTG1_9ARAE; Pathogenesis-related genes transcriptional activator PTI6
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15640615
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53290.11e-24cytokinin response factor 3