PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT5G53290.1 | ||||||||
Common Name | CRF3, ERF065, K19E1.9 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | ERF | ||||||||
Protein Properties | Length: 354aa MW: 40100.2 Da PI: 4.2916 | ||||||||
Description | cytokinin response factor 3 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.7 | 8.2e-20 | 123 | 173 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr+++ +g+W+AeIrdp + r+r++lg+f taeeAa +++a+ +l+g AT5G53290.1 123 KKFRGVRQRP-WGKWAAEIRDPEQ---RRRIWLGTFETAEEAAVVYDNAAIRLRG 173 59********.**********743...5*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.72E-34 | 123 | 180 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 3.2E-30 | 124 | 181 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.775 | 124 | 181 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.4E-12 | 124 | 173 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.7E-39 | 124 | 187 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.18E-21 | 124 | 182 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.6E-10 | 125 | 136 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-10 | 147 | 163 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009736 | Biological Process | cytokinin-activated signaling pathway | ||||
GO:0009873 | Biological Process | ethylene-activated signaling pathway | ||||
GO:0042991 | Biological Process | transcription factor import into nucleus | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0009005 | anatomy | root | ||||
PO:0009025 | anatomy | vascular leaf |
Sequence ? help Back to Top |
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Protein Sequence Length: 354 aa Download sequence Send to blast |
MDEYIDFRPL KYTEHKTSMT KYTKKSSEKL SGGKSLKKVS ICYTDPDATD SSSDEDEEDF 60 LFPRRRVKRF VNEITVEPSC NNVVTGVSMK DRKRLSSSSD ETQSPASSRQ RPNNKVSVSG 120 QIKKFRGVRQ RPWGKWAAEI RDPEQRRRIW LGTFETAEEA AVVYDNAAIR LRGPDALTNF 180 SIPPQEEEEE EEPEPVIEEK PVIMTTPTPT TSSSESTEED LQHLSSPTSV LNHRSEEIQQ 240 VQQPFKSAKP EPGVSNAPWW HTGFNTGLGE SDDSFPLDTP FLDNYFNESP PEMSIFDQPM 300 DQIFCENDDI FNDMLFLGGE TMNIEDELTS SSIKDMGSTF SDFDDSLISD LLVA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-22 | 123 | 182 | 1 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
Genevisible | 248253_at | 0.0 | ||||
Expression Atlas | AT5G53290 | - | ||||
AtGenExpress | AT5G53290 | - | ||||
ATTED-II | AT5G53290 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. | |||||
UniProt | Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}. |
Function -- GeneRIF ? help Back to Top | ||||||
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT5G53290.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Regulation -- ATRM (Manually Curated Upstream Regulators) ? help Back to Top | ||||||
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Source | Upstream Regulator (A: Activate/R: Repress) | |||||
ATRM | AT2G20180 (R) |
Interaction ? help Back to Top | ||||||
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Source | Intact With | |||||
BioGRID | AT5G53290, AT1G22985, AT1G71130 | |||||
IntAct | Search Q9FK12 |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT5G53290 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB013388 | 0.0 | AB013388.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K19E1. | |||
GenBank | AY560878 | 0.0 | AY560878.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g53290) mRNA, complete cds. | |||
GenBank | BT020244 | 0.0 | BT020244.1 Arabidopsis thaliana At5g53290 gene, complete cds. | |||
GenBank | BT021136 | 0.0 | BT021136.1 Arabidopsis thaliana At5g53290 gene, complete cds. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_200141.1 | 0.0 | cytokinin response factor 3 | ||||
Swissprot | Q9FK12 | 0.0 | CRF3_ARATH; Ethylene-responsive transcription factor CRF3 | ||||
TrEMBL | A0A178UA30 | 0.0 | A0A178UA30_ARATH; CRF3 | ||||
STRING | AT5G53290.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2229 | 25 | 76 | Representative plant | OGRP6 | 16 | 1718 |
Link Out ? help Back to Top | |
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Phytozome | AT5G53290.1 |
Entrez Gene | 835410 |
iHOP | AT5G53290 |
wikigenes | AT5G53290 |