PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo3G0006000
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family WRKY
Protein Properties Length: 362aa    MW: 39291.8 Da    PI: 6.3512
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo3G0006000genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY832.9e-26192252259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                     dDgy+WrKYGqK++  s+fprsYYrCt++   gC++kk+v+r ++dp + eitY g+H ++
  Spipo3G0006000 192 DDGYTWRKYGQKNILHSRFPRSYYRCTHKnfyGCEAKKQVQRLDDDPYTYEITYCGDHSCR 252
                     8***************************99999*************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081121.471186254IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.4E-26187252IPR003657WRKY domain
SuperFamilySSF1182903.79E-24190253IPR003657WRKY domain
SMARTSM007741.8E-34191253IPR003657WRKY domain
PfamPF031061.3E-24192252IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MEEILPLIVR SCEKARELGE NLPRVASQAH LLLDTCKEIA ADFSNAVDKL ASAQALDGEV  60
PGSGQRGEED SFGSEYMDTM DLLYGRGNGE GRPEILRAPP ERGVGPQGLP ELGLEIPVTH  120
GLRGELGVAS GEVDWIPGHH RRSPATTGLS SFSSTIAIAS VQRSTRKSRK DGSRTWTKRV  180
PAVEGNLDAL PDDGYTWRKY GQKNILHSRF PRSYYRCTHK NFYGCEAKKQ VQRLDDDPYT  240
YEITYCGDHS CRTSPTPYPI INDAGAEGRE VTSAAQAQYP SAVSISAMVG SWFPANVDAR  300
YLESSHARVH AGESSGAAHR KLSPLPGGRD VDCSVADLAD VMFNSRGGCI LDAFFSSKQQ  360
N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-21192252969OsWRKY45
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00304DAPTransfer from AT2G40740Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97963344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.19e-34WRKY DNA-binding protein 55